Lynx canadensis faeces associated genomovirus CL1 148

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus lynca4

Average proteome isoelectric point is 7.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CJ94|A0A2Z5CJ94_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 148 OX=2219123 PE=3 SV=1
MM1 pKa = 7.56SFHH4 pKa = 7.26CNAQYY9 pKa = 11.23FLVTYY14 pKa = 7.6AQCGDD19 pKa = 4.0LDD21 pKa = 3.71PWSVMEE27 pKa = 4.75RR28 pKa = 11.84FSTLGAEE35 pKa = 4.5CIIARR40 pKa = 11.84EE41 pKa = 3.96LHH43 pKa = 6.59ADD45 pKa = 3.73LGLHH49 pKa = 5.87LHH51 pKa = 6.5CFVDD55 pKa = 4.63FGRR58 pKa = 11.84KK59 pKa = 8.02FRR61 pKa = 11.84SRR63 pKa = 11.84KK64 pKa = 7.68TDD66 pKa = 2.79IFDD69 pKa = 3.68VGSSHH74 pKa = 7.51PNIEE78 pKa = 4.23PSRR81 pKa = 11.84GTPWAGYY88 pKa = 10.35DD89 pKa = 3.62YY90 pKa = 10.72AIKK93 pKa = 10.89DD94 pKa = 3.47GDD96 pKa = 4.3VVCGGLARR104 pKa = 11.84PRR106 pKa = 11.84QPRR109 pKa = 11.84SKK111 pKa = 9.31STRR114 pKa = 11.84NDD116 pKa = 2.56VHH118 pKa = 7.69QYY120 pKa = 9.72TEE122 pKa = 3.84ITNADD127 pKa = 4.18DD128 pKa = 5.43IEE130 pKa = 4.78HH131 pKa = 6.04FWEE134 pKa = 4.74LLHH137 pKa = 7.77HH138 pKa = 7.26LDD140 pKa = 3.99PKK142 pKa = 8.83TAVVNFVSATKK153 pKa = 9.94YY154 pKa = 10.69AEE156 pKa = 3.91ARR158 pKa = 11.84FADD161 pKa = 4.05VEE163 pKa = 4.22PGYY166 pKa = 10.37EE167 pKa = 3.7PRR169 pKa = 11.84RR170 pKa = 11.84RR171 pKa = 11.84QDD173 pKa = 3.51FVAGDD178 pKa = 3.71DD179 pKa = 4.01DD180 pKa = 4.95GRR182 pKa = 11.84DD183 pKa = 3.48AVKK186 pKa = 10.75SLVLFGEE193 pKa = 4.38PLTGKK198 pKa = 8.47TDD200 pKa = 3.28WARR203 pKa = 11.84CLGNHH208 pKa = 6.21VYY210 pKa = 10.71TMGIVSGDD218 pKa = 3.57QMLKK222 pKa = 9.94IANPDD227 pKa = 2.76VKK229 pKa = 10.96YY230 pKa = 10.96AVFDD234 pKa = 4.95DD235 pKa = 3.28IRR237 pKa = 11.84GGIKK241 pKa = 9.99FFPSFKK247 pKa = 10.33EE248 pKa = 3.72WLGCQAYY255 pKa = 7.88VTVTKK260 pKa = 10.25KK261 pKa = 10.8YY262 pKa = 10.52KK263 pKa = 9.98EE264 pKa = 4.1PKK266 pKa = 8.34LMKK269 pKa = 9.51WGRR272 pKa = 11.84PSIWLSNKK280 pKa = 9.96DD281 pKa = 3.78PRR283 pKa = 11.84TEE285 pKa = 4.05MDD287 pKa = 3.7PSDD290 pKa = 4.75ANWLEE295 pKa = 4.1ANCTFIEE302 pKa = 4.15INTPIFHH309 pKa = 7.44ANTT312 pKa = 3.57

Molecular weight: 35.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CJ94|A0A2Z5CJ94_9VIRU Replication-associated protein OS=Lynx canadensis faeces associated genomovirus CL1 148 OX=2219123 PE=3 SV=1
MM1 pKa = 7.86PYY3 pKa = 8.52STKK6 pKa = 10.18RR7 pKa = 11.84GSRR10 pKa = 11.84RR11 pKa = 11.84SYY13 pKa = 8.95TKK15 pKa = 9.97RR16 pKa = 11.84GGFKK20 pKa = 10.39RR21 pKa = 11.84RR22 pKa = 11.84TAPKK26 pKa = 9.54RR27 pKa = 11.84RR28 pKa = 11.84TSYY31 pKa = 10.1RR32 pKa = 11.84RR33 pKa = 11.84SRR35 pKa = 11.84YY36 pKa = 9.27SRR38 pKa = 11.84PKK40 pKa = 8.31RR41 pKa = 11.84TVMPKK46 pKa = 10.25KK47 pKa = 10.42RR48 pKa = 11.84ILNLTSTKK56 pKa = 10.2KK57 pKa = 10.43RR58 pKa = 11.84NTMLQYY64 pKa = 11.51ANTSTSGGGSVTIGPGPYY82 pKa = 10.0LVTGALGGFSIFCPTAMDD100 pKa = 3.69LTEE103 pKa = 5.03KK104 pKa = 10.62SGANNSVVNVAEE116 pKa = 4.51RR117 pKa = 11.84NSTTCFMRR125 pKa = 11.84GFSEE129 pKa = 4.03NLRR132 pKa = 11.84IQTSTGIPWFWRR144 pKa = 11.84RR145 pKa = 11.84ITFCSKK151 pKa = 10.42SGVFGVFDD159 pKa = 4.21SGDD162 pKa = 3.5TPTQTNAGEE171 pKa = 4.1TSYY174 pKa = 11.88VDD176 pKa = 3.32TTNGMEE182 pKa = 4.48RR183 pKa = 11.84LWFNQNVNSAPATVTSIQAIMFKK206 pKa = 10.66GQYY209 pKa = 9.22NKK211 pKa = 10.95DD212 pKa = 3.03WVDD215 pKa = 3.5PLTAPLDD222 pKa = 3.65TARR225 pKa = 11.84IDD227 pKa = 3.69VKK229 pKa = 11.25SDD231 pKa = 2.94TTKK234 pKa = 10.86CIRR237 pKa = 11.84SGNASGTVFEE247 pKa = 4.74KK248 pKa = 10.73KK249 pKa = 9.21CWYY252 pKa = 9.53PMNKK256 pKa = 9.47NLVYY260 pKa = 10.83DD261 pKa = 4.46DD262 pKa = 5.1DD263 pKa = 4.63EE264 pKa = 6.36SGEE267 pKa = 4.47GEE269 pKa = 4.17VARR272 pKa = 11.84YY273 pKa = 7.82TSVVDD278 pKa = 3.53KK279 pKa = 11.06KK280 pKa = 11.64GMGDD284 pKa = 3.57YY285 pKa = 10.55FIVDD289 pKa = 3.52IFVVGTGGATADD301 pKa = 3.56QLQVTGTASMYY312 pKa = 8.7WHH314 pKa = 7.06EE315 pKa = 4.33KK316 pKa = 9.44

Molecular weight: 35.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

628

312

316

314.0

35.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.369 ± 0.775

2.07 ± 0.382

6.847 ± 1.396

4.14 ± 0.764

5.096 ± 0.521

8.28 ± 0.95

1.911 ± 1.248

4.299 ± 0.393

6.21 ± 0.341

5.096 ± 1.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.548 ± 0.483

4.618 ± 0.596

4.777 ± 0.519

2.389 ± 0.112

6.847 ± 0.585

7.006 ± 1.451

8.758 ± 2.31

6.688 ± 0.215

2.229 ± 0.259

3.822 ± 0.229
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski