Urbanus proteus nucleopolyhedrovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 119 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A162GU15|A0A162GU15_9ABAC LEF-5 OS=Urbanus proteus nucleopolyhedrovirus OX=1675866 GN=lef-5 PE=4 SV=1
MM1 pKa = 7.21TLEE4 pKa = 3.87HH5 pKa = 7.26DD6 pKa = 3.73KK7 pKa = 10.73TVRR10 pKa = 11.84LYY12 pKa = 11.17LCDD15 pKa = 3.66MPDD18 pKa = 3.09GVTNDD23 pKa = 4.3KK24 pKa = 11.07IEE26 pKa = 4.8DD27 pKa = 3.74DD28 pKa = 3.6NVIYY32 pKa = 10.67FEE34 pKa = 5.34GIIEE38 pKa = 4.39CFDD41 pKa = 5.2DD42 pKa = 3.85EE43 pKa = 4.82TCNKK47 pKa = 9.81FSFFSEE53 pKa = 4.3LKK55 pKa = 10.4KK56 pKa = 11.07EE57 pKa = 3.99EE58 pKa = 4.07ALFMRR63 pKa = 11.84KK64 pKa = 7.58MFYY67 pKa = 10.91DD68 pKa = 3.5LLEE71 pKa = 4.24YY72 pKa = 11.34NNGNFCKK79 pKa = 10.51NHH81 pKa = 5.35VLIDD85 pKa = 3.67ALIMYY90 pKa = 7.67KK91 pKa = 9.83TYY93 pKa = 11.34AEE95 pKa = 5.35LIDD98 pKa = 4.25EE99 pKa = 4.54SAFGNNILEE108 pKa = 4.35SCVDD112 pKa = 4.48FITNLFRR119 pKa = 11.84IFRR122 pKa = 11.84LNARR126 pKa = 11.84ILVVLSNRR134 pKa = 11.84IDD136 pKa = 3.62YY137 pKa = 11.05SQDD140 pKa = 3.06NLSALLKK147 pKa = 10.53HH148 pKa = 6.59LSQHH152 pKa = 6.02CLIEE156 pKa = 3.96VCYY159 pKa = 10.89QNDD162 pKa = 3.09

Molecular weight: 19.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A162GUK1|A0A162GUK1_9ABAC Uncharacterized protein OS=Urbanus proteus nucleopolyhedrovirus OX=1675866 PE=4 SV=2
MM1 pKa = 7.65INRR4 pKa = 11.84TGFSAPRR11 pKa = 11.84QKK13 pKa = 10.89SEE15 pKa = 3.68ATRR18 pKa = 11.84DD19 pKa = 3.37RR20 pKa = 11.84ASQRR24 pKa = 11.84TMRR27 pKa = 11.84KK28 pKa = 8.94HH29 pKa = 4.82NRR31 pKa = 11.84KK32 pKa = 7.25TRR34 pKa = 11.84ASHH37 pKa = 6.57RR38 pKa = 11.84NRR40 pKa = 11.84TGFSAPRR47 pKa = 11.84QKK49 pKa = 10.89SEE51 pKa = 3.68ATRR54 pKa = 11.84DD55 pKa = 3.67RR56 pKa = 11.84ASKK59 pKa = 10.74KK60 pKa = 10.65YY61 pKa = 9.59MFLSTVDD68 pKa = 3.2VLIVHH73 pKa = 6.83KK74 pKa = 10.67SKK76 pKa = 10.74LVQHH80 pKa = 6.59FLYY83 pKa = 10.41KK84 pKa = 10.34HH85 pKa = 6.71FYY87 pKa = 9.93TFILFNFAMTDD98 pKa = 3.46CSLSKK103 pKa = 10.45INSVFCSEE111 pKa = 4.9NLDD114 pKa = 3.92SMM116 pKa = 4.91

Molecular weight: 13.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

119

0

119

32641

49

1187

274.3

31.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.047 ± 0.152

2.705 ± 0.16

5.818 ± 0.12

5.153 ± 0.142

5.257 ± 0.152

2.426 ± 0.127

2.482 ± 0.113

7.576 ± 0.181

7.898 ± 0.269

9.568 ± 0.221

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.629 ± 0.099

9.644 ± 0.223

2.806 ± 0.16

3.921 ± 0.21

3.934 ± 0.192

6.231 ± 0.171

5.83 ± 0.179

6.36 ± 0.137

0.631 ± 0.05

5.08 ± 0.191
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski