Prevotella dentalis (strain ATCC 49559 / DSM 3688 / JCM 13448 / NCTC 12043 / ES 2772) (Mitsuokella dentalis)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella dentalis

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2494 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9D760|F9D760_PREDD ATPase OS=Prevotella dentalis (strain ATCC 49559 / DSM 3688 / JCM 13448 / NCTC 12043 / ES 2772) OX=908937 GN=Prede_2529 PE=4 SV=1
MM1 pKa = 7.63EE2 pKa = 4.62ATDD5 pKa = 4.17LNEE8 pKa = 3.23ARR10 pKa = 11.84IYY12 pKa = 10.4VGTYY16 pKa = 9.66AKK18 pKa = 10.48YY19 pKa = 11.08NNGSLQGEE27 pKa = 4.35WVEE30 pKa = 5.59LSDD33 pKa = 6.54FYY35 pKa = 11.8DD36 pKa = 3.73LDD38 pKa = 3.98GFMEE42 pKa = 4.68RR43 pKa = 11.84CAGIHH48 pKa = 5.94EE49 pKa = 4.96DD50 pKa = 3.93EE51 pKa = 5.0EE52 pKa = 4.46EE53 pKa = 4.28PEE55 pKa = 4.24YY56 pKa = 10.63MFQAWEE62 pKa = 4.46EE63 pKa = 4.25IPDD66 pKa = 3.7GLIAEE71 pKa = 4.52GHH73 pKa = 5.97LEE75 pKa = 3.9EE76 pKa = 4.97TFFEE80 pKa = 5.11LRR82 pKa = 11.84DD83 pKa = 3.54EE84 pKa = 4.57LDD86 pKa = 3.4RR87 pKa = 11.84LNDD90 pKa = 3.7TEE92 pKa = 6.27KK93 pKa = 10.62EE94 pKa = 4.35AFWVWADD101 pKa = 3.5GNNAQLTQDD110 pKa = 3.57AYY112 pKa = 11.64SLVKK116 pKa = 10.47SFQSDD121 pKa = 4.25YY122 pKa = 10.75IGNYY126 pKa = 9.13ASKK129 pKa = 10.86EE130 pKa = 3.98DD131 pKa = 3.95FAEE134 pKa = 4.42EE135 pKa = 3.76LAKK138 pKa = 10.1MEE140 pKa = 4.67NEE142 pKa = 4.18LSDD145 pKa = 3.58FALNYY150 pKa = 10.23FDD152 pKa = 3.98FSKK155 pKa = 11.2YY156 pKa = 10.79ADD158 pKa = 4.7DD159 pKa = 5.56LFDD162 pKa = 3.4MDD164 pKa = 4.7FWYY167 pKa = 10.83KK168 pKa = 10.66DD169 pKa = 3.16GYY171 pKa = 9.62VFRR174 pKa = 11.84NNN176 pKa = 3.2

Molecular weight: 20.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L0JG74|L0JG74_PREDD Bacterial mobilization protein (MobC) OS=Prevotella dentalis (strain ATCC 49559 / DSM 3688 / JCM 13448 / NCTC 12043 / ES 2772) OX=908937 GN=Prede_2624 PE=4 SV=1
MM1 pKa = 7.85PNGKK5 pKa = 9.19KK6 pKa = 10.25KK7 pKa = 10.12KK8 pKa = 7.0GHH10 pKa = 6.14KK11 pKa = 9.06MATHH15 pKa = 6.13KK16 pKa = 10.39RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.25NRR25 pKa = 11.84HH26 pKa = 4.69KK27 pKa = 11.1SKK29 pKa = 11.1

Molecular weight: 3.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2494

0

2494

957715

29

3161

384.0

43.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.534 ± 0.05

1.265 ± 0.017

5.852 ± 0.031

5.585 ± 0.047

4.139 ± 0.03

7.485 ± 0.044

2.231 ± 0.022

5.412 ± 0.044

5.131 ± 0.049

9.065 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.808 ± 0.022

4.518 ± 0.039

3.973 ± 0.026

3.827 ± 0.029

5.941 ± 0.049

5.769 ± 0.04

5.985 ± 0.043

6.883 ± 0.035

1.385 ± 0.021

4.212 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski