Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Ilumatobacteraceae; Ilumatobacter; Ilumatobacter coccineus

Average proteome isoelectric point is 5.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4290 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C7E3C0|A0A6C7E3C0_ILUCY Uncharacterized protein OS=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) OX=1313172 GN=YM304_05280 PE=4 SV=1
MM1 pKa = 7.47AAAGLAIPTAINTPIASADD20 pKa = 3.42AVGSDD25 pKa = 3.93FEE27 pKa = 4.85SFALGSVDD35 pKa = 5.24GQDD38 pKa = 3.04GWEE41 pKa = 3.79ISGPYY46 pKa = 9.55DD47 pKa = 3.68VEE49 pKa = 4.43VVDD52 pKa = 6.37ASATHH57 pKa = 6.66PSLGNRR63 pKa = 11.84SLRR66 pKa = 11.84ISNAVTSGGFGDD78 pKa = 3.81QTFSKK83 pKa = 10.25PLTEE87 pKa = 4.4EE88 pKa = 4.01AGEE91 pKa = 4.07TDD93 pKa = 3.69AEE95 pKa = 4.32NGGKK99 pKa = 8.03STGPRR104 pKa = 11.84QTSFEE109 pKa = 4.42AEE111 pKa = 3.66WSFASAAPGAEE122 pKa = 3.97QPGLSVVVSPDD133 pKa = 3.04RR134 pKa = 11.84GDD136 pKa = 3.54GGRR139 pKa = 11.84MGWLGMTDD147 pKa = 3.33TPTGLEE153 pKa = 3.89VSYY156 pKa = 11.0YY157 pKa = 10.81GYY159 pKa = 8.71DD160 pKa = 3.25TTLGGTCADD169 pKa = 3.84LDD171 pKa = 3.77NFVFTTVATGLDD183 pKa = 3.18RR184 pKa = 11.84TAVHH188 pKa = 6.03TARR191 pKa = 11.84LRR193 pKa = 11.84MGFNDD198 pKa = 4.13GVDD201 pKa = 3.39NDD203 pKa = 3.94VVEE206 pKa = 4.44VFVDD210 pKa = 4.02GTLVHH215 pKa = 6.63TGKK218 pKa = 9.9SWEE221 pKa = 4.2DD222 pKa = 3.36YY223 pKa = 10.48FRR225 pKa = 11.84NCEE228 pKa = 3.94PPEE231 pKa = 4.1PRR233 pKa = 11.84TVDD236 pKa = 3.12SLLFRR241 pKa = 11.84VSGTAAPATSGFGFLIDD258 pKa = 4.29DD259 pKa = 3.95VSLEE263 pKa = 4.24SSSPPPCTTDD273 pKa = 3.42CYY275 pKa = 11.39VDD277 pKa = 3.4AATGSDD283 pKa = 3.71VNGGTGPADD292 pKa = 3.73ALRR295 pKa = 11.84TIQTAIDD302 pKa = 3.38RR303 pKa = 11.84VDD305 pKa = 3.34PNGNVIVAAGTYY317 pKa = 7.43PVPDD321 pKa = 4.34GLDD324 pKa = 2.99VDD326 pKa = 5.03KK327 pKa = 10.99PLTLDD332 pKa = 3.52GAGSDD337 pKa = 3.82VVTIDD342 pKa = 3.66ASAHH346 pKa = 5.39ASYY349 pKa = 10.95SVAVTADD356 pKa = 3.54DD357 pKa = 3.66VTLEE361 pKa = 3.99GFTLTGNPAGTYY373 pKa = 8.69GLKK376 pKa = 10.04ISSSSPTRR384 pKa = 11.84LSNITVDD391 pKa = 3.95DD392 pKa = 4.05VVVNNSKK399 pKa = 9.11RR400 pKa = 11.84TGIDD404 pKa = 3.22LNGVDD409 pKa = 5.21GGLITNVEE417 pKa = 4.17VHH419 pKa = 6.79DD420 pKa = 4.38VPSGNGLSATDD431 pKa = 3.48SNDD434 pKa = 2.79IVFEE438 pKa = 4.07NVTTSNNAWGGLAIYY453 pKa = 9.05TYY455 pKa = 10.87GRR457 pKa = 11.84YY458 pKa = 9.62YY459 pKa = 10.86SIGSNNVTIQGTNSFGEE476 pKa = 4.08ANPVYY481 pKa = 10.86VEE483 pKa = 3.99TGNYY487 pKa = 9.18NDD489 pKa = 5.1PGNPAPVTNLTVNGFDD505 pKa = 3.33YY506 pKa = 10.82TVANDD511 pKa = 3.26DD512 pKa = 3.52HH513 pKa = 6.93RR514 pKa = 11.84AGGEE518 pKa = 4.0LFTFYY523 pKa = 11.16QNTRR527 pKa = 11.84SEE529 pKa = 4.61AIEE532 pKa = 3.9FALALTNPEE541 pKa = 3.54SSYY544 pKa = 10.66VNEE547 pKa = 4.25VATGDD552 pKa = 3.64FWVGTIGFDD561 pKa = 5.01DD562 pKa = 3.97MTIQAAVDD570 pKa = 3.38HH571 pKa = 7.04AEE573 pKa = 4.2PGDD576 pKa = 3.98TIRR579 pKa = 11.84VLPGTYY585 pKa = 9.44QGNVVVDD592 pKa = 3.75EE593 pKa = 4.22HH594 pKa = 7.86VKK596 pKa = 10.63IIGSGSGSSEE606 pKa = 3.69ASNTVLQKK614 pKa = 10.5SANEE618 pKa = 3.84ALVTIQASGQSAADD632 pKa = 3.47PLLFQDD638 pKa = 5.43LRR640 pKa = 11.84LEE642 pKa = 4.16PVGEE646 pKa = 4.0YY647 pKa = 10.71GFNVNGPAPVQFVEE661 pKa = 4.21FDD663 pKa = 3.36NVKK666 pKa = 10.8VIGTNSGAAYY676 pKa = 9.18EE677 pKa = 4.46AEE679 pKa = 4.28VGLKK683 pKa = 10.52VSTNASLSDD692 pKa = 3.69VVITDD697 pKa = 3.36SAFDD701 pKa = 3.8DD702 pKa = 5.39LVYY705 pKa = 10.46GWYY708 pKa = 9.24FAKK711 pKa = 10.68HH712 pKa = 6.1GDD714 pKa = 3.44WGPGGSNVSNVQVTDD729 pKa = 3.38TSFSNNEE736 pKa = 3.45VKK738 pKa = 10.72GIYY741 pKa = 8.78VEE743 pKa = 4.38KK744 pKa = 10.92LSDD747 pKa = 3.37TTFDD751 pKa = 3.17NVTVVNNGLDD761 pKa = 3.47TTFYY765 pKa = 8.93NAKK768 pKa = 8.6WNSGFDD774 pKa = 3.3INLKK778 pKa = 10.81GEE780 pKa = 4.02EE781 pKa = 4.48TYY783 pKa = 11.42QNITIVNSTFDD794 pKa = 3.64RR795 pKa = 11.84NGLGVEE801 pKa = 4.24EE802 pKa = 4.65GTGLTIKK809 pKa = 10.68ARR811 pKa = 11.84DD812 pKa = 3.54DD813 pKa = 3.66GGTYY817 pKa = 9.91GAHH820 pKa = 6.48PAEE823 pKa = 4.31LTGVTITGNDD833 pKa = 2.66ITGNEE838 pKa = 3.49RR839 pKa = 11.84GIRR842 pKa = 11.84FGEE845 pKa = 4.03PGKK848 pKa = 10.74NNATPTDD855 pKa = 3.98VIVSGNNITGNVVAGVINEE874 pKa = 4.36TLSQTNAIEE883 pKa = 4.22NWWGDD888 pKa = 3.04ASGPSGEE895 pKa = 4.64GPGTGDD901 pKa = 3.17SVSLNVSVCPWLDD914 pKa = 3.54GPAGTGNLVLDD925 pKa = 4.69DD926 pKa = 4.35CPGANEE932 pKa = 4.35LDD934 pKa = 3.93VVNTVDD940 pKa = 3.43WNGVTPDD947 pKa = 3.3AAQTFEE953 pKa = 4.03ICIEE957 pKa = 4.42GPSHH961 pKa = 7.05VVADD965 pKa = 4.06CQLAGSSTEE974 pKa = 3.94TLTWSDD980 pKa = 4.89LYY982 pKa = 11.23HH983 pKa = 7.02GDD985 pKa = 3.59YY986 pKa = 10.66TVTQTDD992 pKa = 4.21PGTEE996 pKa = 3.72WTVDD1000 pKa = 3.11ITGSPVTVADD1010 pKa = 4.66GVPSTPANVTNTHH1023 pKa = 6.81DD1024 pKa = 3.95PAEE1027 pKa = 4.79GEE1029 pKa = 4.54GPTPDD1034 pKa = 4.22APPTFPATPDD1044 pKa = 4.35DD1045 pKa = 3.7ISVVTEE1051 pKa = 4.56PGASSATVEE1060 pKa = 4.28YY1061 pKa = 9.33PLPEE1065 pKa = 4.62AADD1068 pKa = 4.63DD1069 pKa = 4.02DD1070 pKa = 4.88TEE1072 pKa = 4.24TLPTVVCTPASGTEE1086 pKa = 4.17FPVGDD1091 pKa = 3.62NTVTCTATDD1100 pKa = 3.55SADD1103 pKa = 3.44QTAEE1107 pKa = 3.94TTFTISVSPYY1117 pKa = 9.18SDD1119 pKa = 5.3LIAVDD1124 pKa = 3.69PARR1127 pKa = 11.84FLDD1130 pKa = 3.75TRR1132 pKa = 11.84GTGSNVTIDD1141 pKa = 4.94GIAQGEE1147 pKa = 4.71GPVPAGTSITIPVAEE1162 pKa = 4.93RR1163 pKa = 11.84GDD1165 pKa = 3.67VTADD1169 pKa = 3.02AVGAMVNIAAINPSGNGYY1187 pKa = 7.82VTLYY1191 pKa = 9.83PCTDD1195 pKa = 3.78EE1196 pKa = 4.95VPTAASLNFEE1206 pKa = 4.58AGVSISNATFVEE1218 pKa = 4.33LSDD1221 pKa = 5.45DD1222 pKa = 3.89GDD1224 pKa = 3.73VCAFASNTTGLALDD1238 pKa = 3.77VVGYY1242 pKa = 8.95MPVTSRR1248 pKa = 11.84IDD1250 pKa = 3.32FVAPARR1256 pKa = 11.84LLEE1259 pKa = 3.98TRR1261 pKa = 11.84IGEE1264 pKa = 4.34GLTTIDD1270 pKa = 4.62GRR1272 pKa = 11.84SQGDD1276 pKa = 3.7GAITAGNTIEE1286 pKa = 4.14VQVAGRR1292 pKa = 11.84AGVADD1297 pKa = 4.1DD1298 pKa = 5.14AVAAMVNVAAVNPTDD1313 pKa = 3.04TGYY1316 pKa = 8.45ITLFPCDD1323 pKa = 3.47SEE1325 pKa = 4.93QPVAASLNYY1334 pKa = 9.12TAGTNISNTTLVALSSDD1351 pKa = 3.19GVLCVFSEE1359 pKa = 4.44DD1360 pKa = 3.89ATDD1363 pKa = 3.65LTIDD1367 pKa = 3.76VIGYY1371 pKa = 8.85ASPGTDD1377 pKa = 2.53VGTLNPSRR1385 pKa = 11.84LLEE1388 pKa = 4.21TRR1390 pKa = 11.84TGTGQVTVDD1399 pKa = 5.23GIAQGDD1405 pKa = 4.11GQVDD1409 pKa = 3.4AGHH1412 pKa = 7.0FISVPIAGRR1421 pKa = 11.84SDD1423 pKa = 3.55VPDD1426 pKa = 3.94DD1427 pKa = 4.93AIAVVVNLAAINPAAVGYY1445 pKa = 7.75ATLYY1449 pKa = 9.96PCTEE1453 pKa = 4.31TPPVAASLNYY1463 pKa = 9.64RR1464 pKa = 11.84AGVNISNATLVDD1476 pKa = 4.28LSDD1479 pKa = 5.08DD1480 pKa = 3.8GDD1482 pKa = 3.77VCLFTSATAHH1492 pKa = 4.75YY1493 pKa = 8.53TIDD1496 pKa = 3.32VLSFVTATSVDD1507 pKa = 3.35AA1508 pKa = 5.22

Molecular weight: 155.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6C7EAY4|A0A6C7EAY4_ILUCY UPF0434 protein YM304_28480 OS=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) OX=1313172 GN=YM304_28480 PE=3 SV=1
MM1 pKa = 7.57GSLIKK6 pKa = 10.25KK7 pKa = 8.32RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.27RR11 pKa = 11.84MRR13 pKa = 11.84KK14 pKa = 8.96KK15 pKa = 9.73KK16 pKa = 8.93HH17 pKa = 5.59KK18 pKa = 10.34KK19 pKa = 6.44MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84HH26 pKa = 4.1QRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.0

Molecular weight: 3.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4290

0

4290

1492228

30

5213

347.8

37.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.205 ± 0.05

0.829 ± 0.012

7.756 ± 0.042

5.784 ± 0.038

3.203 ± 0.022

8.858 ± 0.043

2.136 ± 0.022

4.669 ± 0.024

1.83 ± 0.029

9.033 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.035 ± 0.019

2.322 ± 0.027

5.465 ± 0.03

2.566 ± 0.02

6.7 ± 0.055

5.982 ± 0.035

6.559 ± 0.066

8.821 ± 0.04

1.42 ± 0.015

1.827 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski