Xanthomonas phage Tenjo

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 57 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A679KKI9|A0A679KKI9_9CAUD Uncharacterized protein OS=Xanthomonas phage Tenjo OX=2674974 PE=4 SV=1
MM1 pKa = 7.52TRR3 pKa = 11.84DD4 pKa = 2.94QWLEE8 pKa = 3.7KK9 pKa = 10.08CAEE12 pKa = 4.11RR13 pKa = 11.84LRR15 pKa = 11.84EE16 pKa = 3.98KK17 pKa = 10.97AGMEE21 pKa = 4.1PGEE24 pKa = 4.1AAAYY28 pKa = 10.32AIMLHH33 pKa = 6.72DD34 pKa = 4.18NQVNDD39 pKa = 3.52NGRR42 pKa = 11.84EE43 pKa = 3.94PGSWDD48 pKa = 4.56DD49 pKa = 3.89PTDD52 pKa = 3.51TADD55 pKa = 3.6EE56 pKa = 4.86EE57 pKa = 4.15ISYY60 pKa = 10.17MSDD63 pKa = 4.33DD64 pKa = 3.92EE65 pKa = 7.09DD66 pKa = 6.85GDD68 pKa = 4.35DD69 pKa = 4.18EE70 pKa = 4.5PP71 pKa = 6.33

Molecular weight: 8.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A679KLG0|A0A679KLG0_9CAUD Uncharacterized protein OS=Xanthomonas phage Tenjo OX=2674974 PE=4 SV=1
MM1 pKa = 7.29KK2 pKa = 10.22RR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84TITQAEE12 pKa = 4.01AQALKK17 pKa = 10.65RR18 pKa = 11.84RR19 pKa = 11.84VAKK22 pKa = 10.95LEE24 pKa = 4.05DD25 pKa = 3.67DD26 pKa = 3.82EE27 pKa = 4.35EE28 pKa = 4.53RR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84AAWVSDD37 pKa = 3.58YY38 pKa = 11.15PDD40 pKa = 3.49GVNIATHH47 pKa = 7.14DD48 pKa = 4.16FPSSDD53 pKa = 3.45SVVPTALRR61 pKa = 11.84TARR64 pKa = 11.84KK65 pKa = 9.03LGHH68 pKa = 7.08AIVAVDD74 pKa = 3.63DD75 pKa = 3.79GHH77 pKa = 7.16RR78 pKa = 11.84LRR80 pKa = 11.84FYY82 pKa = 11.33ALPLPKK88 pKa = 10.31AA89 pKa = 3.83

Molecular weight: 10.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

57

0

57

13431

37

2341

235.6

25.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.789 ± 0.757

0.774 ± 0.185

6.619 ± 0.271

5.941 ± 0.284

2.911 ± 0.181

8.361 ± 0.316

1.459 ± 0.134

4.155 ± 0.241

3.946 ± 0.283

7.81 ± 0.288

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.36 ± 0.125

3.12 ± 0.181

4.936 ± 0.32

4.996 ± 0.266

7.006 ± 0.321

4.832 ± 0.24

5.941 ± 0.286

7.036 ± 0.309

1.631 ± 0.15

2.375 ± 0.163
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski