Amino acid dipepetide frequency for Wuhan fly virus 5

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.944AlaAla: 2.944 ± 0.572
2.944AlaCys: 2.944 ± 1.982
1.963AlaAsp: 1.963 ± 1.321
2.944AlaGlu: 2.944 ± 2.248
2.944AlaPhe: 2.944 ± 0.572
0.0AlaGly: 0.0 ± 0.0
1.963AlaHis: 1.963 ± 0.089
2.944AlaIle: 2.944 ± 1.982
1.963AlaLys: 1.963 ± 1.321
1.963AlaLeu: 1.963 ± 0.089
0.0AlaMet: 0.0 ± 0.0
3.925AlaAsn: 3.925 ± 0.177
1.963AlaPro: 1.963 ± 0.089
2.944AlaGln: 2.944 ± 1.982
6.869AlaArg: 6.869 ± 1.805
1.963AlaSer: 1.963 ± 1.321
1.963AlaThr: 1.963 ± 1.321
1.963AlaVal: 1.963 ± 0.089
0.981AlaTrp: 0.981 ± 0.749
3.925AlaTyr: 3.925 ± 0.177
0.0AlaXaa: 0.0 ± 0.0
Cys
0.981CysAla: 0.981 ± 0.661
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.981CysGlu: 0.981 ± 0.661
0.981CysPhe: 0.981 ± 0.661
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
2.944CysIle: 2.944 ± 0.572
0.981CysLys: 0.981 ± 0.661
0.981CysLeu: 0.981 ± 0.661
0.981CysMet: 0.981 ± 0.661
0.981CysAsn: 0.981 ± 0.661
0.981CysPro: 0.981 ± 0.749
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.981CysSer: 0.981 ± 0.749
0.981CysThr: 0.981 ± 0.749
0.981CysVal: 0.981 ± 0.661
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.944AspAla: 2.944 ± 1.982
0.0AspCys: 0.0 ± 0.0
2.944AspAsp: 2.944 ± 1.982
1.963AspGlu: 1.963 ± 1.498
6.869AspPhe: 6.869 ± 1.805
3.925AspGly: 3.925 ± 1.233
0.0AspHis: 0.0 ± 0.0
2.944AspIle: 2.944 ± 1.982
4.907AspLys: 4.907 ± 0.484
5.888AspLeu: 5.888 ± 0.266
1.963AspMet: 1.963 ± 0.089
1.963AspAsn: 1.963 ± 1.498
4.907AspPro: 4.907 ± 0.484
0.0AspGln: 0.0 ± 0.0
0.981AspArg: 0.981 ± 0.661
3.925AspSer: 3.925 ± 1.233
1.963AspThr: 1.963 ± 1.498
3.925AspVal: 3.925 ± 1.233
0.981AspTrp: 0.981 ± 0.661
1.963AspTyr: 1.963 ± 1.321
0.0AspXaa: 0.0 ± 0.0
Glu
2.944GluAla: 2.944 ± 0.838
0.0GluCys: 0.0 ± 0.0
3.925GluAsp: 3.925 ± 1.233
4.907GluGlu: 4.907 ± 2.336
3.925GluPhe: 3.925 ± 0.177
1.963GluGly: 1.963 ± 1.321
1.963GluHis: 1.963 ± 1.321
6.869GluIle: 6.869 ± 2.425
0.981GluLys: 0.981 ± 0.661
5.888GluLeu: 5.888 ± 3.085
1.963GluMet: 1.963 ± 0.089
2.944GluAsn: 2.944 ± 0.572
0.0GluPro: 0.0 ± 0.0
1.963GluGln: 1.963 ± 1.498
2.944GluArg: 2.944 ± 0.838
1.963GluSer: 1.963 ± 1.498
2.944GluThr: 2.944 ± 0.838
1.963GluVal: 1.963 ± 1.321
0.981GluTrp: 0.981 ± 0.749
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.963PheAla: 1.963 ± 1.321
0.981PheCys: 0.981 ± 0.749
4.907PheAsp: 4.907 ± 0.484
0.981PheGlu: 0.981 ± 0.661
0.981PhePhe: 0.981 ± 0.661
3.925PheGly: 3.925 ± 0.177
0.0PheHis: 0.0 ± 0.0
4.907PheIle: 4.907 ± 0.484
5.888PheLys: 5.888 ± 0.266
8.832PheLeu: 8.832 ± 0.306
1.963PheMet: 1.963 ± 0.089
5.888PheAsn: 5.888 ± 3.085
4.907PhePro: 4.907 ± 0.484
1.963PheGln: 1.963 ± 0.089
1.963PheArg: 1.963 ± 0.089
2.944PheSer: 2.944 ± 0.572
2.944PheThr: 2.944 ± 0.572
3.925PheVal: 3.925 ± 0.177
0.0PheTrp: 0.0 ± 0.0
2.944PheTyr: 2.944 ± 0.838
0.0PheXaa: 0.0 ± 0.0
Gly
1.963GlyAla: 1.963 ± 0.089
0.0GlyCys: 0.0 ± 0.0
0.981GlyAsp: 0.981 ± 0.661
2.944GlyGlu: 2.944 ± 0.572
7.851GlyPhe: 7.851 ± 0.354
6.869GlyGly: 6.869 ± 2.425
0.981GlyHis: 0.981 ± 0.661
1.963GlyIle: 1.963 ± 0.089
2.944GlyLys: 2.944 ± 1.982
3.925GlyLeu: 3.925 ± 1.233
1.963GlyMet: 1.963 ± 1.321
3.925GlyAsn: 3.925 ± 1.587
2.944GlyPro: 2.944 ± 0.838
2.944GlyGln: 2.944 ± 0.838
2.944GlyArg: 2.944 ± 2.248
4.907GlySer: 4.907 ± 2.336
0.981GlyThr: 0.981 ± 0.661
3.925GlyVal: 3.925 ± 0.177
0.981GlyTrp: 0.981 ± 0.749
5.888GlyTyr: 5.888 ± 1.144
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.981HisAsp: 0.981 ± 0.749
0.981HisGlu: 0.981 ± 0.661
1.963HisPhe: 1.963 ± 0.089
0.981HisGly: 0.981 ± 0.661
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
2.944HisLys: 2.944 ± 1.982
2.944HisLeu: 2.944 ± 0.572
0.0HisMet: 0.0 ± 0.0
1.963HisAsn: 1.963 ± 0.089
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
2.944HisArg: 2.944 ± 1.982
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
1.963HisVal: 1.963 ± 0.089
0.0HisTrp: 0.0 ± 0.0
1.963HisTyr: 1.963 ± 0.089
0.0HisXaa: 0.0 ± 0.0
Ile
4.907IleAla: 4.907 ± 0.484
0.0IleCys: 0.0 ± 0.0
2.944IleAsp: 2.944 ± 0.572
3.925IleGlu: 3.925 ± 2.997
2.944IlePhe: 2.944 ± 0.572
3.925IleGly: 3.925 ± 1.587
1.963IleHis: 1.963 ± 0.089
6.869IleIle: 6.869 ± 0.395
2.944IleLys: 2.944 ± 1.982
3.925IleLeu: 3.925 ± 2.643
0.981IleMet: 0.981 ± 0.477
3.925IleAsn: 3.925 ± 1.233
4.907IlePro: 4.907 ± 2.336
1.963IleGln: 1.963 ± 0.089
2.944IleArg: 2.944 ± 1.982
4.907IleSer: 4.907 ± 0.484
4.907IleThr: 4.907 ± 1.893
1.963IleVal: 1.963 ± 1.321
0.0IleTrp: 0.0 ± 0.0
3.925IleTyr: 3.925 ± 0.177
0.0IleXaa: 0.0 ± 0.0
Lys
2.944LysAla: 2.944 ± 0.572
0.981LysCys: 0.981 ± 0.661
4.907LysAsp: 4.907 ± 0.484
1.963LysGlu: 1.963 ± 0.089
3.925LysPhe: 3.925 ± 1.587
0.981LysGly: 0.981 ± 0.661
0.981LysHis: 0.981 ± 0.661
2.944LysIle: 2.944 ± 0.572
3.925LysLys: 3.925 ± 0.177
3.925LysLeu: 3.925 ± 1.233
0.981LysMet: 0.981 ± 0.749
6.869LysAsn: 6.869 ± 1.805
3.925LysPro: 3.925 ± 2.997
0.0LysGln: 0.0 ± 0.0
2.944LysArg: 2.944 ± 0.572
5.888LysSer: 5.888 ± 1.144
3.925LysThr: 3.925 ± 1.233
0.0LysVal: 0.0 ± 0.0
0.0LysTrp: 0.0 ± 0.0
5.888LysTyr: 5.888 ± 0.266
0.0LysXaa: 0.0 ± 0.0
Leu
4.907LeuAla: 4.907 ± 1.893
0.981LeuCys: 0.981 ± 0.749
0.0LeuAsp: 0.0 ± 0.0
10.795LeuGlu: 10.795 ± 1.628
0.0LeuPhe: 0.0 ± 0.0
7.851LeuGly: 7.851 ± 1.056
1.963LeuHis: 1.963 ± 1.321
3.925LeuIle: 3.925 ± 1.233
3.925LeuLys: 3.925 ± 1.587
2.944LeuLeu: 2.944 ± 0.838
0.981LeuMet: 0.981 ± 0.749
7.851LeuAsn: 7.851 ± 1.764
7.851LeuPro: 7.851 ± 3.875
1.963LeuGln: 1.963 ± 1.321
0.981LeuArg: 0.981 ± 0.749
8.832LeuSer: 8.832 ± 3.923
6.869LeuThr: 6.869 ± 1.015
6.869LeuVal: 6.869 ± 0.395
0.981LeuTrp: 0.981 ± 0.661
3.925LeuTyr: 3.925 ± 1.587
0.0LeuXaa: 0.0 ± 0.0
Met
0.981MetAla: 0.981 ± 0.661
0.0MetCys: 0.0 ± 0.0
0.981MetAsp: 0.981 ± 0.661
0.981MetGlu: 0.981 ± 0.661
0.981MetPhe: 0.981 ± 0.661
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.981MetIle: 0.981 ± 0.661
0.0MetLys: 0.0 ± 0.0
0.981MetLeu: 0.981 ± 0.661
0.0MetMet: 0.0 ± 0.0
2.944MetAsn: 2.944 ± 0.838
1.963MetPro: 1.963 ± 1.498
0.981MetGln: 0.981 ± 0.749
1.963MetArg: 1.963 ± 0.089
2.944MetSer: 2.944 ± 2.248
1.963MetThr: 1.963 ± 1.321
1.963MetVal: 1.963 ± 0.089
0.0MetTrp: 0.0 ± 0.0
0.981MetTyr: 0.981 ± 0.661
0.0MetXaa: 0.0 ± 0.0
Asn
0.981AsnAla: 0.981 ± 0.661
0.981AsnCys: 0.981 ± 0.661
2.944AsnAsp: 2.944 ± 0.838
2.944AsnGlu: 2.944 ± 0.572
7.851AsnPhe: 7.851 ± 5.994
2.944AsnGly: 2.944 ± 0.838
0.981AsnHis: 0.981 ± 0.749
6.869AsnIle: 6.869 ± 0.395
2.944AsnLys: 2.944 ± 0.572
7.851AsnLeu: 7.851 ± 1.764
1.963AsnMet: 1.963 ± 0.089
8.832AsnAsn: 8.832 ± 5.333
4.907AsnPro: 4.907 ± 0.926
2.944AsnGln: 2.944 ± 0.838
0.0AsnArg: 0.0 ± 0.0
3.925AsnSer: 3.925 ± 1.233
1.963AsnThr: 1.963 ± 1.498
7.851AsnVal: 7.851 ± 1.056
1.963AsnTrp: 1.963 ± 0.089
0.981AsnTyr: 0.981 ± 0.661
0.0AsnXaa: 0.0 ± 0.0
Pro
3.925ProAla: 3.925 ± 0.177
0.0ProCys: 0.0 ± 0.0
3.925ProAsp: 3.925 ± 1.233
1.963ProGlu: 1.963 ± 0.089
2.944ProPhe: 2.944 ± 0.572
4.907ProGly: 4.907 ± 0.484
0.981ProHis: 0.981 ± 0.749
6.869ProIle: 6.869 ± 0.395
5.888ProLys: 5.888 ± 1.676
2.944ProLeu: 2.944 ± 0.838
0.0ProMet: 0.0 ± 0.0
1.963ProAsn: 1.963 ± 1.498
0.981ProPro: 0.981 ± 0.661
1.963ProGln: 1.963 ± 1.498
1.963ProArg: 1.963 ± 1.321
10.795ProSer: 10.795 ± 2.602
2.944ProThr: 2.944 ± 2.248
2.944ProVal: 2.944 ± 0.838
0.981ProTrp: 0.981 ± 0.661
2.944ProTyr: 2.944 ± 0.838
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
0.981GlnCys: 0.981 ± 0.661
0.981GlnAsp: 0.981 ± 0.661
2.944GlnGlu: 2.944 ± 0.838
0.981GlnPhe: 0.981 ± 0.749
1.963GlnGly: 1.963 ± 1.498
0.981GlnHis: 0.981 ± 0.749
2.944GlnIle: 2.944 ± 0.572
0.981GlnLys: 0.981 ± 0.749
0.0GlnLeu: 0.0 ± 0.0
0.981GlnMet: 0.981 ± 0.661
0.981GlnAsn: 0.981 ± 0.749
0.0GlnPro: 0.0 ± 0.0
4.907GlnGln: 4.907 ± 2.336
3.925GlnArg: 3.925 ± 1.587
0.981GlnSer: 0.981 ± 0.661
0.981GlnThr: 0.981 ± 0.661
2.944GlnVal: 2.944 ± 1.982
0.0GlnTrp: 0.0 ± 0.0
0.981GlnTyr: 0.981 ± 0.749
0.0GlnXaa: 0.0 ± 0.0
Arg
5.888ArgAla: 5.888 ± 1.144
0.981ArgCys: 0.981 ± 0.749
3.925ArgAsp: 3.925 ± 0.177
1.963ArgGlu: 1.963 ± 1.321
3.925ArgPhe: 3.925 ± 2.643
5.888ArgGly: 5.888 ± 1.676
1.963ArgHis: 1.963 ± 1.321
1.963ArgIle: 1.963 ± 1.321
0.981ArgLys: 0.981 ± 0.749
4.907ArgLeu: 4.907 ± 1.893
0.0ArgMet: 0.0 ± 0.0
3.925ArgAsn: 3.925 ± 1.233
1.963ArgPro: 1.963 ± 1.498
0.981ArgGln: 0.981 ± 0.661
3.925ArgArg: 3.925 ± 0.177
4.907ArgSer: 4.907 ± 0.484
2.944ArgThr: 2.944 ± 1.982
3.925ArgVal: 3.925 ± 2.997
0.0ArgTrp: 0.0 ± 0.0
0.981ArgTyr: 0.981 ± 0.749
0.0ArgXaa: 0.0 ± 0.0
Ser
4.907SerAla: 4.907 ± 0.484
1.963SerCys: 1.963 ± 0.089
5.888SerAsp: 5.888 ± 0.266
2.944SerGlu: 2.944 ± 2.248
4.907SerPhe: 4.907 ± 0.926
6.869SerGly: 6.869 ± 1.015
0.981SerHis: 0.981 ± 0.661
3.925SerIle: 3.925 ± 0.177
4.907SerLys: 4.907 ± 0.926
6.869SerLeu: 6.869 ± 1.015
1.963SerMet: 1.963 ± 0.089
3.925SerAsn: 3.925 ± 0.177
6.869SerPro: 6.869 ± 1.015
0.981SerGln: 0.981 ± 0.661
5.888SerArg: 5.888 ± 2.554
0.0SerSer: 0.0 ± 0.0
0.981SerThr: 0.981 ± 0.661
3.925SerVal: 3.925 ± 2.997
0.981SerTrp: 0.981 ± 0.749
3.925SerTyr: 3.925 ± 1.587
0.0SerXaa: 0.0 ± 0.0
Thr
0.981ThrAla: 0.981 ± 0.661
0.981ThrCys: 0.981 ± 0.661
1.963ThrAsp: 1.963 ± 0.089
0.0ThrGlu: 0.0 ± 0.0
0.0ThrPhe: 0.0 ± 0.0
3.925ThrGly: 3.925 ± 1.587
0.981ThrHis: 0.981 ± 0.661
0.981ThrIle: 0.981 ± 0.661
3.925ThrLys: 3.925 ± 0.177
3.925ThrLeu: 3.925 ± 1.233
0.981ThrMet: 0.981 ± 0.749
5.888ThrAsn: 5.888 ± 1.144
3.925ThrPro: 3.925 ± 0.177
0.981ThrGln: 0.981 ± 0.749
4.907ThrArg: 4.907 ± 1.893
2.944ThrSer: 2.944 ± 0.838
4.907ThrThr: 4.907 ± 0.926
1.963ThrVal: 1.963 ± 1.498
0.981ThrTrp: 0.981 ± 0.661
4.907ThrTyr: 4.907 ± 0.484
0.0ThrXaa: 0.0 ± 0.0
Val
1.963ValAla: 1.963 ± 1.321
0.981ValCys: 0.981 ± 0.661
5.888ValAsp: 5.888 ± 1.144
2.944ValGlu: 2.944 ± 0.838
2.944ValPhe: 2.944 ± 0.572
2.944ValGly: 2.944 ± 0.572
1.963ValHis: 1.963 ± 1.321
2.944ValIle: 2.944 ± 0.838
3.925ValLys: 3.925 ± 0.177
6.869ValLeu: 6.869 ± 1.015
1.963ValMet: 1.963 ± 0.578
0.981ValAsn: 0.981 ± 0.749
4.907ValPro: 4.907 ± 0.926
0.0ValGln: 0.0 ± 0.0
3.925ValArg: 3.925 ± 1.587
2.944ValSer: 2.944 ± 0.838
2.944ValThr: 2.944 ± 1.982
0.981ValVal: 0.981 ± 0.661
0.0ValTrp: 0.0 ± 0.0
2.944ValTyr: 2.944 ± 0.572
0.0ValXaa: 0.0 ± 0.0
Trp
0.981TrpAla: 0.981 ± 0.749
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.981TrpGly: 0.981 ± 0.661
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.963TrpLeu: 1.963 ± 1.321
0.0TrpMet: 0.0 ± 0.0
0.981TrpAsn: 0.981 ± 0.749
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.963TrpArg: 1.963 ± 0.089
2.944TrpSer: 2.944 ± 0.838
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.963TyrAla: 1.963 ± 0.089
0.981TyrCys: 0.981 ± 0.661
4.907TyrAsp: 4.907 ± 1.893
1.963TyrGlu: 1.963 ± 1.498
5.888TyrPhe: 5.888 ± 1.144
0.981TyrGly: 0.981 ± 0.661
0.981TyrHis: 0.981 ± 0.749
0.981TyrIle: 0.981 ± 0.749
2.944TyrLys: 2.944 ± 0.572
6.869TyrLeu: 6.869 ± 2.425
0.981TyrMet: 0.981 ± 0.661
1.963TyrAsn: 1.963 ± 1.498
3.925TyrPro: 3.925 ± 0.177
1.963TyrGln: 1.963 ± 0.089
1.963TyrArg: 1.963 ± 0.089
4.907TyrSer: 4.907 ± 0.484
2.944TyrThr: 2.944 ± 2.248
1.963TyrVal: 1.963 ± 1.321
0.0TyrTrp: 0.0 ± 0.0
0.981TyrTyr: 0.981 ± 0.749
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1020 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski