Agromyces albus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Agromyces

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3965 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q2KWU5|A0A4Q2KWU5_9MICO Uncharacterized protein OS=Agromyces albus OX=205332 GN=ESP51_13830 PE=4 SV=1
MM1 pKa = 7.06VSRR4 pKa = 11.84RR5 pKa = 11.84QRR7 pKa = 11.84TALLAAGALVAGLIAPVALAAPVYY31 pKa = 10.51AAVTCDD37 pKa = 3.09VGGFEE42 pKa = 5.02IDD44 pKa = 3.72GNFTAEE50 pKa = 3.88DD51 pKa = 4.12CAPGFDD57 pKa = 4.25DD58 pKa = 4.49WDD60 pKa = 3.64NVAYY64 pKa = 10.42DD65 pKa = 3.59STTQGGTYY73 pKa = 9.86SASSKK78 pKa = 10.18EE79 pKa = 4.26DD80 pKa = 3.49EE81 pKa = 5.57DD82 pKa = 4.15PAGWTSAGNTPDD94 pKa = 3.2KK95 pKa = 10.9GTFAEE100 pKa = 4.44VFSFARR106 pKa = 11.84IADD109 pKa = 3.69GDD111 pKa = 4.25YY112 pKa = 8.83FTYY115 pKa = 10.71VAWTRR120 pKa = 11.84DD121 pKa = 3.54NNTGTGGYY129 pKa = 10.21AIEE132 pKa = 4.09ITNAGEE138 pKa = 4.06RR139 pKa = 11.84VAEE142 pKa = 4.96DD143 pKa = 3.68GTPQPDD149 pKa = 3.27RR150 pKa = 11.84SLGGSVFYY158 pKa = 11.55VEE160 pKa = 4.73MQGSDD165 pKa = 3.47LPDD168 pKa = 3.86FLEE171 pKa = 4.96GCVYY175 pKa = 10.62TSVDD179 pKa = 4.31DD180 pKa = 4.3FPGVCSSDD188 pKa = 3.16EE189 pKa = 3.86TGYY192 pKa = 10.35FAEE195 pKa = 4.49ISEE198 pKa = 4.93DD199 pKa = 3.54GLFFEE204 pKa = 5.55VGLNLTEE211 pKa = 4.29LSGVAPGCPPVSEE224 pKa = 4.31TTTVYY229 pKa = 10.41VRR231 pKa = 11.84SQTGQAGTEE240 pKa = 4.08ANLKK244 pKa = 10.59GYY246 pKa = 8.13VAPLQVDD253 pKa = 4.0PPSTCGEE260 pKa = 3.87ILVDD264 pKa = 5.38KK265 pKa = 8.38EE266 pKa = 4.56TLPDD270 pKa = 3.71EE271 pKa = 4.33YY272 pKa = 11.47DD273 pKa = 3.28KK274 pKa = 11.67DD275 pKa = 4.09FEE277 pKa = 4.24FAFAGEE283 pKa = 4.37EE284 pKa = 4.22GTIDD288 pKa = 3.63FTLNDD293 pKa = 3.57ATDD296 pKa = 3.94DD297 pKa = 4.14EE298 pKa = 4.87GALWSSGPIPAGTYY312 pKa = 7.47TLEE315 pKa = 4.17EE316 pKa = 4.38LVPAGWTLDD325 pKa = 4.44DD326 pKa = 4.17ISCGTVEE333 pKa = 4.19GHH335 pKa = 5.05TTTIEE340 pKa = 3.98IAEE343 pKa = 4.44HH344 pKa = 5.8EE345 pKa = 4.59VVSCVFTNSLDD356 pKa = 3.85VVPTEE361 pKa = 3.69PAKK364 pKa = 10.37PIKK367 pKa = 8.87PTLAATGVDD376 pKa = 3.75PMSGLWLGLLLFGAGGLVFTVRR398 pKa = 11.84RR399 pKa = 11.84ARR401 pKa = 11.84ATRR404 pKa = 11.84AA405 pKa = 3.08

Molecular weight: 42.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q2L775|A0A4Q2L775_9MICO Phosphatase PAP2 family protein OS=Agromyces albus OX=205332 GN=ESP51_05305 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3965

0

3965

1288838

29

2330

325.1

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.563 ± 0.059

0.474 ± 0.009

6.155 ± 0.036

6.059 ± 0.036

3.289 ± 0.023

9.008 ± 0.035

2.004 ± 0.018

4.568 ± 0.027

1.761 ± 0.028

10.042 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.73 ± 0.013

1.993 ± 0.024

5.453 ± 0.029

2.563 ± 0.017

7.324 ± 0.044

5.702 ± 0.028

5.859 ± 0.035

8.888 ± 0.037

1.555 ± 0.016

2.009 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski