Haemophilus parahaemolyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2159 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A377I3F2|A0A377I3F2_HAEPH Transferrin-binding protein 1 OS=Haemophilus parahaemolyticus OX=735 GN=tbpA_1 PE=3 SV=1
MM1 pKa = 7.33YY2 pKa = 10.64NLTEE6 pKa = 4.28LRR8 pKa = 11.84QEE10 pKa = 3.71TDD12 pKa = 3.53EE13 pKa = 5.12IIEE16 pKa = 4.21NLLADD21 pKa = 4.34GSDD24 pKa = 3.56PEE26 pKa = 3.88ALYY29 pKa = 10.34IIEE32 pKa = 4.34HH33 pKa = 6.44HH34 pKa = 6.26VAHH37 pKa = 7.01HH38 pKa = 7.11DD39 pKa = 3.61FDD41 pKa = 4.39KK42 pKa = 11.43LEE44 pKa = 4.14KK45 pKa = 10.64LVVDD49 pKa = 5.05AYY51 pKa = 10.22KK52 pKa = 10.62LGYY55 pKa = 9.28EE56 pKa = 3.62ISEE59 pKa = 4.2AEE61 pKa = 4.12EE62 pKa = 4.08VEE64 pKa = 3.78EE65 pKa = 4.64DD66 pKa = 3.73GNVFFVCDD74 pKa = 3.38IVSEE78 pKa = 4.39INLNADD84 pKa = 5.5LITAQQKK91 pKa = 9.93EE92 pKa = 4.7LLPLIEE98 pKa = 4.47KK99 pKa = 10.59AGAEE103 pKa = 4.09YY104 pKa = 10.31EE105 pKa = 4.15GWGTYY110 pKa = 10.13FEE112 pKa = 5.36DD113 pKa = 4.8PNGEE117 pKa = 3.97DD118 pKa = 5.38DD119 pKa = 4.69EE120 pKa = 5.48YY121 pKa = 11.7GDD123 pKa = 4.17DD124 pKa = 4.08GEE126 pKa = 4.94FFEE129 pKa = 5.57EE130 pKa = 4.31HH131 pKa = 7.54DD132 pKa = 3.79EE133 pKa = 5.38DD134 pKa = 5.21FDD136 pKa = 4.89FDD138 pKa = 3.61EE139 pKa = 4.78EE140 pKa = 4.61EE141 pKa = 4.42IVRR144 pKa = 11.84HH145 pKa = 5.18

Molecular weight: 16.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A369ZA00|A0A369ZA00_HAEPH 50S ribosomal protein L3 OS=Haemophilus parahaemolyticus OX=735 GN=rplC PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2159

0

2159

623779

29

4420

288.9

32.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.58 ± 0.083

0.947 ± 0.018

4.878 ± 0.044

6.857 ± 0.083

4.479 ± 0.044

6.55 ± 0.071

2.036 ± 0.026

6.765 ± 0.055

6.517 ± 0.047

10.266 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.428 ± 0.027

4.914 ± 0.063

3.607 ± 0.031

4.679 ± 0.058

4.38 ± 0.057

5.8 ± 0.044

5.311 ± 0.066

6.749 ± 0.07

1.131 ± 0.018

3.123 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski