Legionella lansingensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2630 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0W0VQD9|A0A0W0VQD9_9GAMM Phosphopentomutase OS=Legionella lansingensis OX=45067 GN=deoB PE=3 SV=1
MM1 pKa = 7.41AAINASPTSSGIYY14 pKa = 9.77FSVSAADD21 pKa = 4.07KK22 pKa = 9.87VASLIAEE29 pKa = 4.14EE30 pKa = 4.59EE31 pKa = 4.21NPNLNLRR38 pKa = 11.84VFVTGGGCSGFQYY51 pKa = 11.02GFTFDD56 pKa = 4.63EE57 pKa = 5.59KK58 pKa = 10.56IQEE61 pKa = 4.56DD62 pKa = 4.03DD63 pKa = 3.66TVIEE67 pKa = 4.33QTCSNGQSSVKK78 pKa = 10.48LLVDD82 pKa = 3.58SMSYY86 pKa = 10.51QYY88 pKa = 11.4LNEE91 pKa = 4.08AEE93 pKa = 3.91IDD95 pKa = 4.01YY96 pKa = 10.16VQSIQGEE103 pKa = 4.29QFVIRR108 pKa = 11.84NPNAKK113 pKa = 8.39STCGCGSSFSIEE125 pKa = 5.85DD126 pKa = 3.46EE127 pKa = 5.31DD128 pKa = 4.75EE129 pKa = 4.62DD130 pKa = 4.13NN131 pKa = 4.62

Molecular weight: 14.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0W0VKD9|A0A0W0VKD9_9GAMM Uncharacterized protein OS=Legionella lansingensis OX=45067 GN=Llan_1824 PE=4 SV=1
MM1 pKa = 8.1DD2 pKa = 5.08GAQGRR7 pKa = 11.84SRR9 pKa = 11.84TGTEE13 pKa = 3.89FNPPRR18 pKa = 11.84DD19 pKa = 4.2FKK21 pKa = 11.53SLASTCFATWAFYY34 pKa = 9.49WRR36 pKa = 11.84LRR38 pKa = 11.84PEE40 pKa = 4.05SNRR43 pKa = 11.84RR44 pKa = 11.84PRR46 pKa = 11.84LCRR49 pKa = 11.84PLHH52 pKa = 5.41NHH54 pKa = 6.36SATQPKK60 pKa = 10.27LNPKK64 pKa = 9.62KK65 pKa = 10.55KK66 pKa = 9.68SDD68 pKa = 3.67YY69 pKa = 10.53GVALIWSGKK78 pKa = 8.91RR79 pKa = 11.84DD80 pKa = 3.87SNSRR84 pKa = 11.84PQPWQGCALPTEE96 pKa = 5.06LFPPLYY102 pKa = 10.47GLPFYY107 pKa = 10.93RR108 pKa = 11.84KK109 pKa = 9.31FLRR112 pKa = 11.84CQQVNAKK119 pKa = 9.94FIRR122 pKa = 11.84NLNTSHH128 pKa = 7.59KK129 pKa = 10.23FYY131 pKa = 10.96TFLNDD136 pKa = 3.05SS137 pKa = 3.67

Molecular weight: 16.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2630

0

2630

866165

50

2863

329.3

36.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.107 ± 0.049

1.181 ± 0.019

4.825 ± 0.037

6.06 ± 0.052

4.488 ± 0.037

6.137 ± 0.049

2.561 ± 0.023

7.22 ± 0.042

6.03 ± 0.044

11.185 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.343 ± 0.023

4.405 ± 0.038

4.19 ± 0.03

4.543 ± 0.039

4.592 ± 0.034

6.201 ± 0.033

5.285 ± 0.033

6.104 ± 0.042

1.181 ± 0.018

3.358 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski