Capybara microvirus Cap3_SP_554

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W656|A0A4P8W656_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_554 OX=2585475 PE=4 SV=1
MM1 pKa = 7.74AFLKK5 pKa = 10.38KK6 pKa = 10.1QYY8 pKa = 8.19EE9 pKa = 4.35VKK11 pKa = 10.88YY12 pKa = 8.18PTFSNIVPDD21 pKa = 3.54YY22 pKa = 10.45KK23 pKa = 10.97YY24 pKa = 11.25NEE26 pKa = 3.83VTGIVEE32 pKa = 4.31EE33 pKa = 4.21VGKK36 pKa = 10.33IDD38 pKa = 3.94LQEE41 pKa = 4.87KK42 pKa = 10.25INSCRR47 pKa = 11.84VNCLDD52 pKa = 5.04YY53 pKa = 11.16ILDD56 pKa = 3.65QYY58 pKa = 11.38LEE60 pKa = 4.49NGNSVNDD67 pKa = 3.87LFKK70 pKa = 11.32VSVDD74 pKa = 3.53VSDD77 pKa = 6.24DD78 pKa = 3.45IADD81 pKa = 4.09CSQPLDD87 pKa = 4.56DD88 pKa = 5.99IMYY91 pKa = 10.6QNDD94 pKa = 3.32VMNLMDD100 pKa = 4.58EE101 pKa = 5.19LKK103 pKa = 10.54DD104 pKa = 3.52KK105 pKa = 11.45YY106 pKa = 10.76GASDD110 pKa = 3.42MSNDD114 pKa = 4.04DD115 pKa = 3.92FIKK118 pKa = 10.77YY119 pKa = 10.58LSDD122 pKa = 3.3EE123 pKa = 4.49KK124 pKa = 11.02IKK126 pKa = 10.42IDD128 pKa = 3.39TYY130 pKa = 11.09INEE133 pKa = 4.03KK134 pKa = 8.25THH136 pKa = 6.74AKK138 pKa = 10.12EE139 pKa = 3.68GDD141 pKa = 3.5INEE144 pKa = 4.34SS145 pKa = 3.23

Molecular weight: 16.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVU7|A0A4V1FVU7_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_554 OX=2585475 PE=4 SV=1
MM1 pKa = 7.53CLSPLKK7 pKa = 10.25AVHH10 pKa = 6.63SVFEE14 pKa = 4.36DD15 pKa = 3.99LEE17 pKa = 4.41TGEE20 pKa = 4.23VHH22 pKa = 7.36SKK24 pKa = 10.55IKK26 pKa = 8.13ITKK29 pKa = 9.83YY30 pKa = 8.92PDD32 pKa = 2.97LFIRR36 pKa = 11.84DD37 pKa = 3.59NPTIIKK43 pKa = 9.8CEE45 pKa = 4.61PISLPCGHH53 pKa = 7.22CIEE56 pKa = 5.16CLNQISNEE64 pKa = 3.68WTFRR68 pKa = 11.84LQAEE72 pKa = 4.6SIYY75 pKa = 10.41HH76 pKa = 5.9SKK78 pKa = 11.06ACFITLTYY86 pKa = 11.0AEE88 pKa = 4.81TDD90 pKa = 3.15GSLNPRR96 pKa = 11.84DD97 pKa = 3.27IEE99 pKa = 4.32LFLKK103 pKa = 10.55RR104 pKa = 11.84LRR106 pKa = 11.84KK107 pKa = 10.02SIAPVKK113 pKa = 10.02IRR115 pKa = 11.84YY116 pKa = 7.97FLSGEE121 pKa = 4.13YY122 pKa = 10.12GSKK125 pKa = 10.33GLRR128 pKa = 11.84PHH130 pKa = 5.34YY131 pKa = 10.16HH132 pKa = 5.76VIVFGWCPDD141 pKa = 3.79DD142 pKa = 4.58LYY144 pKa = 11.29FWKK147 pKa = 10.32KK148 pKa = 9.32SKK150 pKa = 10.56KK151 pKa = 10.21GFINYY156 pKa = 8.38RR157 pKa = 11.84SPKK160 pKa = 9.7VEE162 pKa = 4.2KK163 pKa = 9.62LWKK166 pKa = 10.03FGFSTVEE173 pKa = 3.86MLSSRR178 pKa = 11.84TCKK181 pKa = 9.48YY182 pKa = 6.96TAKK185 pKa = 10.35YY186 pKa = 6.83MQKK189 pKa = 7.9MTLNWEE195 pKa = 4.32TNHH198 pKa = 5.68VYY200 pKa = 10.5PFVRR204 pKa = 11.84MSTKK208 pKa = 10.27PGIGFQWFLDD218 pKa = 3.51HH219 pKa = 7.06KK220 pKa = 10.58RR221 pKa = 11.84CLEE224 pKa = 3.97TDD226 pKa = 2.99TMYY229 pKa = 10.62IGGIGRR235 pKa = 11.84RR236 pKa = 11.84VPRR239 pKa = 11.84YY240 pKa = 8.31FLKK243 pKa = 9.72IAEE246 pKa = 4.18RR247 pKa = 11.84EE248 pKa = 4.27GVNLSEE254 pKa = 4.8LKK256 pKa = 10.57EE257 pKa = 3.97NRR259 pKa = 11.84INLAIKK265 pKa = 9.55FEE267 pKa = 4.43RR268 pKa = 11.84DD269 pKa = 3.31SITLEE274 pKa = 3.87NLKK277 pKa = 10.58NKK279 pKa = 10.28YY280 pKa = 10.19LDD282 pKa = 5.52LFGAWCYY289 pKa = 10.91NDD291 pKa = 3.75SGGEE295 pKa = 4.0KK296 pKa = 10.36

Molecular weight: 34.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1490

71

553

212.9

24.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.906 ± 1.427

1.477 ± 0.616

7.047 ± 1.034

5.302 ± 0.879

5.235 ± 0.521

6.107 ± 0.73

1.678 ± 0.352

8.255 ± 0.694

6.846 ± 1.171

7.718 ± 0.927

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.349 ± 0.398

7.181 ± 1.007

3.758 ± 0.761

2.416 ± 0.298

3.557 ± 0.656

8.658 ± 0.82

4.43 ± 0.598

5.973 ± 0.777

1.074 ± 0.311

5.034 ± 0.331
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski