Yersinia phage vB_YenP_ISAO8

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Aghbyvirus; Yersinia virus ISAO8

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 46 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0H4TGZ7|A0A0H4TGZ7_9CAUD Uncharacterized protein OS=Yersinia phage vB_YenP_ISAO8 OX=1675027 PE=4 SV=1
MM1 pKa = 7.63AKK3 pKa = 9.59KK4 pKa = 10.05QRR6 pKa = 11.84YY7 pKa = 8.62LNGTIFYY14 pKa = 9.94RR15 pKa = 11.84FDD17 pKa = 3.3GTALRR22 pKa = 11.84PWVQQVNGVQAGPFATLEE40 pKa = 4.16DD41 pKa = 3.68AQAALDD47 pKa = 4.23SSNDD51 pKa = 3.27PDD53 pKa = 3.9NFDD56 pKa = 5.48LIGSLEE62 pKa = 3.92MRR64 pKa = 11.84KK65 pKa = 9.85VKK67 pKa = 10.7LNEE70 pKa = 4.07QPDD73 pKa = 3.91GTTQCEE79 pKa = 4.54SFCMAEE85 pKa = 3.86EE86 pKa = 4.66TPFDD90 pKa = 3.68VYY92 pKa = 11.39GLYY95 pKa = 11.01GRR97 pKa = 11.84TTDD100 pKa = 4.83GYY102 pKa = 10.88LLHH105 pKa = 6.89LADD108 pKa = 4.15YY109 pKa = 10.75DD110 pKa = 3.56RR111 pKa = 11.84YY112 pKa = 10.27AAVRR116 pKa = 11.84NQYY119 pKa = 11.38ALLIDD124 pKa = 3.83RR125 pKa = 11.84LGNGPVDD132 pKa = 3.51YY133 pKa = 10.85RR134 pKa = 11.84EE135 pKa = 4.23LLEE138 pKa = 4.61AVQQ141 pKa = 4.25

Molecular weight: 15.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0H4U2C1|A0A0H4U2C1_9CAUD Uncharacterized protein OS=Yersinia phage vB_YenP_ISAO8 OX=1675027 PE=4 SV=1
MM1 pKa = 7.48TYY3 pKa = 10.85KK4 pKa = 10.42NRR6 pKa = 11.84NASPEE11 pKa = 3.88YY12 pKa = 9.93RR13 pKa = 11.84KK14 pKa = 10.47AIAARR19 pKa = 11.84TARR22 pKa = 11.84RR23 pKa = 11.84EE24 pKa = 3.63AAARR28 pKa = 11.84AKK30 pKa = 10.65LEE32 pKa = 3.92QDD34 pKa = 2.94QMQWTTEE41 pKa = 3.74GDD43 pKa = 3.73FSHH46 pKa = 7.23LAGNNTMKK54 pKa = 10.26FRR56 pKa = 11.84RR57 pKa = 11.84GG58 pKa = 3.12

Molecular weight: 6.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

46

0

46

12760

46

930

277.4

30.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.82 ± 0.626

0.862 ± 0.133

6.168 ± 0.192

6.552 ± 0.348

3.597 ± 0.219

7.547 ± 0.287

1.975 ± 0.158

4.53 ± 0.238

6.23 ± 0.278

7.908 ± 0.32

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.346 ± 0.189

4.522 ± 0.252

4.013 ± 0.221

4.514 ± 0.4

5.752 ± 0.283

5.282 ± 0.297

5.666 ± 0.284

6.544 ± 0.279

1.74 ± 0.195

3.433 ± 0.235
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski