Clostridium tagluense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4934 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A401UG75|A0A401UG75_9CLOT ATP synthase subunit alpha OS=Clostridium tagluense OX=360422 GN=atpA_2 PE=3 SV=1
MM1 pKa = 7.42KK2 pKa = 10.46SVIKK6 pKa = 9.8VCNMNTSDD14 pKa = 5.6DD15 pKa = 3.48ISNINVAISNNQGVIACQINSEE37 pKa = 4.29SKK39 pKa = 10.28EE40 pKa = 3.62IEE42 pKa = 4.33IIYY45 pKa = 10.5DD46 pKa = 3.6DD47 pKa = 4.48YY48 pKa = 11.45FVSLDD53 pKa = 3.55NLIEE57 pKa = 4.58SIEE60 pKa = 4.1DD61 pKa = 2.78AGYY64 pKa = 11.15AVII67 pKa = 5.63

Molecular weight: 7.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A401UT22|A0A401UT22_9CLOT Uncharacterized protein OS=Clostridium tagluense OX=360422 GN=Ctaglu_42870 PE=4 SV=1
MM1 pKa = 7.57GNLKK5 pKa = 10.46NKK7 pKa = 9.65LAQFMYY13 pKa = 10.44GRR15 pKa = 11.84YY16 pKa = 8.36GTDD19 pKa = 2.7QLYY22 pKa = 10.13NALIVVYY29 pKa = 9.05FVLIVANAFISSAIIRR45 pKa = 11.84ILMSAVLIWTIFRR58 pKa = 11.84ALSRR62 pKa = 11.84NVYY65 pKa = 8.56KK66 pKa = 10.62RR67 pKa = 11.84RR68 pKa = 11.84MEE70 pKa = 3.87NEE72 pKa = 3.53KK73 pKa = 10.46FMKK76 pKa = 9.26IWKK79 pKa = 7.97PVKK82 pKa = 10.44GSGSLMLRR90 pKa = 11.84RR91 pKa = 11.84IKK93 pKa = 10.05EE94 pKa = 4.03IKK96 pKa = 6.27THH98 pKa = 6.4RR99 pKa = 11.84FRR101 pKa = 11.84KK102 pKa = 9.8CPHH105 pKa = 6.02CKK107 pKa = 9.6KK108 pKa = 10.39VLRR111 pKa = 11.84LPRR114 pKa = 11.84TRR116 pKa = 11.84GKK118 pKa = 10.1HH119 pKa = 4.52IVKK122 pKa = 10.1CPCCNKK128 pKa = 9.91EE129 pKa = 4.07FEE131 pKa = 4.51LQILLL136 pKa = 4.21

Molecular weight: 16.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4934

0

4934

1433567

39

2876

290.5

32.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.7 ± 0.039

1.271 ± 0.016

5.379 ± 0.026

7.179 ± 0.038

4.411 ± 0.029

6.304 ± 0.032

1.403 ± 0.015

10.044 ± 0.039

9.141 ± 0.04

8.969 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.778 ± 0.018

6.215 ± 0.032

2.699 ± 0.019

2.544 ± 0.017

3.2 ± 0.023

6.424 ± 0.027

5.14 ± 0.03

6.426 ± 0.035

0.711 ± 0.011

4.061 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski