Cronobacter phage CR3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vequintavirinae; Certrevirus; Cronobacter virus CR3

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 265 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I1TRU3|I1TRU3_9CAUD Uncharacterized protein OS=Cronobacter phage CR3 OX=1162295 GN=CR3_251 PE=4 SV=1
MM1 pKa = 7.95LIMVDD6 pKa = 4.51EE7 pKa = 4.61EE8 pKa = 4.42PEE10 pKa = 3.87YY11 pKa = 10.84DD12 pKa = 3.86SPHH15 pKa = 5.92GSVWIVAVDD24 pKa = 3.21YY25 pKa = 10.87AGRR28 pKa = 11.84VTVLDD33 pKa = 4.51PPNLHH38 pKa = 6.96PGIMDD43 pKa = 4.49NGPEE47 pKa = 3.92AEE49 pKa = 4.33YY50 pKa = 10.86LGLPPDD56 pKa = 4.36VDD58 pKa = 4.74DD59 pKa = 4.97MDD61 pKa = 4.96PGVYY65 pKa = 9.04RR66 pKa = 11.84WTCSYY71 pKa = 8.49HH72 pKa = 3.88THH74 pKa = 6.75IDD76 pKa = 3.65RR77 pKa = 11.84EE78 pKa = 4.4SGHH81 pKa = 6.88VDD83 pKa = 3.32DD84 pKa = 5.82YY85 pKa = 11.87DD86 pKa = 4.28FEE88 pKa = 5.34IEE90 pKa = 4.2EE91 pKa = 4.79SVLLWSPDD99 pKa = 3.28NAA101 pKa = 4.28

Molecular weight: 11.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I1TRG9|I1TRG9_9CAUD Uncharacterized protein OS=Cronobacter phage CR3 OX=1162295 GN=CR3_127 PE=4 SV=1
MM1 pKa = 6.83EE2 pKa = 6.31HH3 pKa = 6.95IYY5 pKa = 10.42FYY7 pKa = 10.95LLWVLFSVVGIWRR20 pKa = 11.84MLSLMSVSGRR30 pKa = 11.84VGNDD34 pKa = 2.92DD35 pKa = 3.61RR36 pKa = 11.84VMLLFMLTPACFLMTPVLLFVEE58 pKa = 4.38LMFWVGRR65 pKa = 11.84KK66 pKa = 8.26IDD68 pKa = 3.83KK69 pKa = 10.2FRR71 pKa = 11.84EE72 pKa = 3.99SPRR75 pKa = 11.84YY76 pKa = 7.51VTWKK80 pKa = 8.9IQRR83 pKa = 11.84QIRR86 pKa = 11.84KK87 pKa = 8.73RR88 pKa = 11.84RR89 pKa = 11.84RR90 pKa = 11.84GPLVRR95 pKa = 11.84VVEE98 pKa = 4.14HH99 pKa = 6.02LHH101 pKa = 5.8NKK103 pKa = 9.66RR104 pKa = 11.84KK105 pKa = 9.97EE106 pKa = 3.83KK107 pKa = 9.98TRR109 pKa = 11.84EE110 pKa = 3.83EE111 pKa = 4.17NVPEE115 pKa = 4.17VV116 pKa = 3.45

Molecular weight: 14.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

265

0

265

43819

57

1093

165.4

18.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.54 ± 0.187

1.196 ± 0.076

6.52 ± 0.149

6.881 ± 0.219

4.238 ± 0.12

8.038 ± 0.358

1.874 ± 0.1

5.543 ± 0.133

6.513 ± 0.187

7.793 ± 0.169

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.088 ± 0.107

4.322 ± 0.13

4.142 ± 0.137

3.619 ± 0.133

5.144 ± 0.161

5.317 ± 0.162

5.714 ± 0.251

7.095 ± 0.181

1.655 ± 0.077

3.768 ± 0.125
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski