Capybara microvirus Cap3_SP_391

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8H6|A0A4P8W8H6_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_391 OX=2585442 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 4.37SEE4 pKa = 4.04EE5 pKa = 5.07DD6 pKa = 3.26IYY8 pKa = 11.61EE9 pKa = 4.46KK10 pKa = 10.55IQADD14 pKa = 3.95LEE16 pKa = 4.27DD17 pKa = 4.2SKK19 pKa = 11.31IEE21 pKa = 4.11NIIQRR26 pKa = 11.84VEE28 pKa = 4.04YY29 pKa = 10.28GDD31 pKa = 3.83VGALSARR38 pKa = 11.84QGIYY42 pKa = 10.69ADD44 pKa = 3.5IADD47 pKa = 5.0MPTSWAEE54 pKa = 3.89AQTKK58 pKa = 7.39ITAMEE63 pKa = 4.1QIFNKK68 pKa = 10.37LPLEE72 pKa = 3.99VRR74 pKa = 11.84KK75 pKa = 10.06AYY77 pKa = 10.45DD78 pKa = 3.26FNFRR82 pKa = 11.84AFIADD87 pKa = 3.62YY88 pKa = 11.05GSDD91 pKa = 3.19QFMEE95 pKa = 4.17ALGVHH100 pKa = 6.43RR101 pKa = 11.84EE102 pKa = 4.18GKK104 pKa = 9.54PVEE107 pKa = 4.1QPAAEE112 pKa = 4.12KK113 pKa = 10.74PEE115 pKa = 4.35GGEE118 pKa = 4.11AEE120 pKa = 4.15

Molecular weight: 13.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4W5|A0A4P8W4W5_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_391 OX=2585442 PE=3 SV=1
MM1 pKa = 7.71AWRR4 pKa = 11.84AYY6 pKa = 9.63CIAWQPITGCSRR18 pKa = 11.84NCSKK22 pKa = 10.52IAAGTRR28 pKa = 11.84RR29 pKa = 11.84AYY31 pKa = 10.28RR32 pKa = 11.84KK33 pKa = 9.3QRR35 pKa = 11.84WGLMRR40 pKa = 11.84CSHH43 pKa = 7.28PLMAFYY49 pKa = 10.09TIDD52 pKa = 3.54PVTGRR57 pKa = 11.84KK58 pKa = 8.35NLRR61 pKa = 11.84HH62 pKa = 6.03FKK64 pKa = 10.84SIDD67 pKa = 3.42TADD70 pKa = 3.14GKK72 pKa = 10.76AIYY75 pKa = 9.01EE76 pKa = 4.05LHH78 pKa = 6.03DD79 pKa = 3.49QEE81 pKa = 4.34RR82 pKa = 11.84TIMIPCGQCLACRR95 pKa = 11.84MRR97 pKa = 11.84YY98 pKa = 9.78SNDD101 pKa = 2.75WANRR105 pKa = 11.84IYY107 pKa = 10.98LEE109 pKa = 4.22ACTYY113 pKa = 10.31PRR115 pKa = 11.84DD116 pKa = 4.08RR117 pKa = 11.84NWFLTLTYY125 pKa = 10.84DD126 pKa = 4.76EE127 pKa = 5.18DD128 pKa = 3.85HH129 pKa = 6.82LPYY132 pKa = 10.78GSGEE136 pKa = 4.16RR137 pKa = 11.84PTLIKK142 pKa = 10.93DD143 pKa = 3.85EE144 pKa = 4.2ISKK147 pKa = 10.17FMKK150 pKa = 10.38ALRR153 pKa = 11.84QRR155 pKa = 11.84WAEE158 pKa = 4.4DD159 pKa = 3.2EE160 pKa = 4.36TQTEE164 pKa = 5.01GIRR167 pKa = 11.84FFGCGEE173 pKa = 4.15YY174 pKa = 10.58GGKK177 pKa = 6.81TQRR180 pKa = 11.84PHH182 pKa = 4.92YY183 pKa = 10.26HH184 pKa = 7.05IILLNCLIKK193 pKa = 10.74KK194 pKa = 10.03EE195 pKa = 3.95DD196 pKa = 3.48LKK198 pKa = 11.34VYY200 pKa = 8.84KK201 pKa = 10.28TEE203 pKa = 4.44AGHH206 pKa = 6.4VLWNVPKK213 pKa = 9.46ITHH216 pKa = 5.64IWGKK220 pKa = 8.07GHH222 pKa = 6.5VVVAEE227 pKa = 4.65CNWEE231 pKa = 4.03TCAYY235 pKa = 7.74TSRR238 pKa = 11.84YY239 pKa = 7.47MLKK242 pKa = 9.72KK243 pKa = 10.14HH244 pKa = 6.26KK245 pKa = 10.68GQDD248 pKa = 2.65ADD250 pKa = 3.78YY251 pKa = 9.76YY252 pKa = 9.18EE253 pKa = 4.54KK254 pKa = 11.04LGIYY258 pKa = 9.31PEE260 pKa = 4.07HH261 pKa = 6.25TRR263 pKa = 11.84MSRR266 pKa = 11.84RR267 pKa = 11.84PGIGADD273 pKa = 3.51YY274 pKa = 11.14LDD276 pKa = 5.61DD277 pKa = 3.45NWEE280 pKa = 4.33QIWSRR285 pKa = 11.84DD286 pKa = 3.32HH287 pKa = 7.87ILIKK291 pKa = 10.29GHH293 pKa = 5.14QAAVPAAYY301 pKa = 8.42TRR303 pKa = 11.84KK304 pKa = 10.08LGYY307 pKa = 9.99SDD309 pKa = 5.1LDD311 pKa = 3.48RR312 pKa = 11.84EE313 pKa = 4.56AEE315 pKa = 4.0IKK317 pKa = 9.96AKK319 pKa = 10.24RR320 pKa = 11.84MHH322 pKa = 6.83RR323 pKa = 11.84AQLTAEE329 pKa = 4.03NEE331 pKa = 4.36ANLGAYY337 pKa = 7.9DD338 pKa = 3.81RR339 pKa = 11.84PVWEE343 pKa = 3.81QLQIEE348 pKa = 4.57EE349 pKa = 3.93EE350 pKa = 4.16AMRR353 pKa = 11.84QRR355 pKa = 11.84TALLKK360 pKa = 10.43RR361 pKa = 11.84RR362 pKa = 11.84LEE364 pKa = 3.98KK365 pKa = 10.96GILKK369 pKa = 10.11KK370 pKa = 10.42KK371 pKa = 7.55YY372 pKa = 9.26HH373 pKa = 6.49LYY375 pKa = 10.36EE376 pKa = 4.69GSLII380 pKa = 3.97

Molecular weight: 44.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1413

82

579

282.6

31.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.13 ± 1.16

1.132 ± 0.658

5.591 ± 0.313

6.369 ± 1.064

3.043 ± 0.542

7.573 ± 1.065

1.84 ± 0.762

5.662 ± 0.711

5.308 ± 0.739

6.369 ± 0.662

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.609 ± 0.548

4.105 ± 0.588

4.388 ± 0.8

5.096 ± 0.455

5.449 ± 1.206

6.794 ± 1.762

6.369 ± 1.074

4.388 ± 0.779

2.265 ± 0.514

5.52 ± 0.686
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski