Vibrio virus fs1

Taxonomy: Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Fibrovirus

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O56849|O56849_9VIRU Uncharacterized protein OS=Vibrio virus fs1 OX=70203 PE=4 SV=1
MM1 pKa = 7.51PVCALPNSQGFLAVTDD17 pKa = 4.27KK18 pKa = 10.95PLNEE22 pKa = 4.31CDD24 pKa = 3.24GGYY27 pKa = 10.23VAVTIQDD34 pKa = 3.3YY35 pKa = 10.53DD36 pKa = 3.69YY37 pKa = 11.27LMSYY41 pKa = 8.66TRR43 pKa = 11.84ITPTDD48 pKa = 3.19AGTAFSFGFMAVFALGYY65 pKa = 9.32LYY67 pKa = 10.33TYY69 pKa = 10.88AVYY72 pKa = 10.17IGKK75 pKa = 9.83KK76 pKa = 10.08LINLLL81 pKa = 3.88

Molecular weight: 8.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O56842|O56842_9VIRU Uncharacterized protein OS=Vibrio virus fs1 OX=70203 PE=4 SV=1
MM1 pKa = 7.85IINTLAPEE9 pKa = 5.2KK10 pKa = 10.6IPFALPSHH18 pKa = 6.26KK19 pKa = 10.25RR20 pKa = 11.84CFSKK24 pKa = 10.68RR25 pKa = 11.84SSS27 pKa = 3.13

Molecular weight: 3.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15

0

15

1804

20

384

120.3

13.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.929 ± 0.78

1.829 ± 0.394

5.71 ± 0.56

4.268 ± 0.607

4.989 ± 0.525

5.82 ± 0.51

1.996 ± 0.642

7.761 ± 0.797

6.375 ± 0.514

9.035 ± 1.157

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.882 ± 0.482

4.435 ± 0.633

5.765 ± 0.665

3.991 ± 0.481

4.157 ± 0.642

7.151 ± 0.831

6.098 ± 0.671

5.931 ± 0.377

1.109 ± 0.271

3.769 ± 0.796
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski