Campylobacter virus CPX

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Eucampyvirinae; Fletchervirus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 149 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8GIZ2|G8GIZ2_9CAUD Uncharacterized protein OS=Campylobacter virus CPX OX=1110702 PE=4 SV=1
MM1 pKa = 7.29KK2 pKa = 10.18LDD4 pKa = 3.4YY5 pKa = 10.68RR6 pKa = 11.84VWDD9 pKa = 4.09DD10 pKa = 3.46KK11 pKa = 11.72NKK13 pKa = 10.3KK14 pKa = 9.62FYY16 pKa = 11.11YY17 pKa = 10.01NEE19 pKa = 3.87NPIDD23 pKa = 4.12GDD25 pKa = 3.86VEE27 pKa = 4.89LFTGYY32 pKa = 9.78IDD34 pKa = 3.83EE35 pKa = 5.0NGNKK39 pKa = 9.29IYY41 pKa = 10.87AGDD44 pKa = 3.84ILEE47 pKa = 4.31HH48 pKa = 5.55LTWVEE53 pKa = 4.03EE54 pKa = 4.04YY55 pKa = 10.16MEE57 pKa = 5.3DD58 pKa = 3.68EE59 pKa = 4.01AHH61 pKa = 6.91EE62 pKa = 3.96EE63 pKa = 4.0LIYY66 pKa = 10.65EE67 pKa = 4.44IVCFDD72 pKa = 4.25IKK74 pKa = 11.07DD75 pKa = 3.65GLYY78 pKa = 10.82SKK80 pKa = 10.98LSDD83 pKa = 4.32GCCGWYY89 pKa = 10.08FEE91 pKa = 5.89HH92 pKa = 7.73FMDD95 pKa = 5.94DD96 pKa = 3.35KK97 pKa = 11.36NNKK100 pKa = 8.3IKK102 pKa = 10.52EE103 pKa = 3.96MWLSGNIHH111 pKa = 6.63EE112 pKa = 5.31NMNLLKK118 pKa = 10.93DD119 pKa = 3.83EE120 pKa = 4.36EE121 pKa = 4.35

Molecular weight: 14.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8GIU1|G8GIU1_9CAUD Putative tail tube protein OS=Campylobacter virus CPX OX=1110702 PE=4 SV=1
MM1 pKa = 7.69PPIKK5 pKa = 10.28HH6 pKa = 5.99MSVADD11 pKa = 5.29RR12 pKa = 11.84IAQKK16 pKa = 10.37RR17 pKa = 11.84YY18 pKa = 9.02RR19 pKa = 11.84KK20 pKa = 8.84QPKK23 pKa = 9.0VKK25 pKa = 10.09RR26 pKa = 11.84KK27 pKa = 9.97LKK29 pKa = 10.22IRR31 pKa = 11.84AKK33 pKa = 10.15KK34 pKa = 8.42NAKK37 pKa = 9.87APSEE41 pKa = 3.99NMSWSSKK48 pKa = 8.72KK49 pKa = 9.93RR50 pKa = 11.84GYY52 pKa = 8.83VRR54 pKa = 11.84KK55 pKa = 9.87DD56 pKa = 2.95PKK58 pKa = 10.58LRR60 pKa = 11.84RR61 pKa = 11.84TMKK64 pKa = 10.55LVAKK68 pKa = 10.31LRR70 pKa = 11.84RR71 pKa = 11.84KK72 pKa = 9.51SS73 pKa = 3.27

Molecular weight: 8.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

149

0

149

39134

69

887

262.6

30.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.365 ± 0.158

1.715 ± 0.134

6.473 ± 0.167

6.82 ± 0.199

4.985 ± 0.137

4.909 ± 0.179

1.513 ± 0.093

9.337 ± 0.165

10.109 ± 0.229

8.793 ± 0.162

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.123 ± 0.08

8.64 ± 0.182

2.686 ± 0.106

2.663 ± 0.089

2.612 ± 0.115

6.866 ± 0.223

5.154 ± 0.2

5.093 ± 0.131

0.795 ± 0.048

5.351 ± 0.151
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski