Lederbergia galactosidilyticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lederbergia

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4048 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q9XZZ1|A0A0Q9XZZ1_9BACI Uncharacterized protein OS=Lederbergia galactosidilyticus OX=217031 GN=ABB05_18285 PE=4 SV=1
MM1 pKa = 6.82VQVKK5 pKa = 10.32LFDD8 pKa = 4.9CDD10 pKa = 3.85HH11 pKa = 6.17EE12 pKa = 4.44QDD14 pKa = 4.98LEE16 pKa = 4.3EE17 pKa = 4.45EE18 pKa = 4.22MNEE21 pKa = 3.9FLEE24 pKa = 4.61QISPRR29 pKa = 11.84DD30 pKa = 3.65VVDD33 pKa = 3.52IKK35 pKa = 11.66YY36 pKa = 10.38NVALIGDD43 pKa = 4.08ASGEE47 pKa = 4.16QVFCFSALIIYY58 pKa = 7.55NTT60 pKa = 3.7

Molecular weight: 6.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A177ZGE5|A0A177ZGE5_9BACI Uncharacterized protein OS=Lederbergia galactosidilyticus OX=217031 GN=ABB05_22175 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.59RR3 pKa = 11.84TFQPNKK9 pKa = 8.24RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84SKK14 pKa = 10.24VHH16 pKa = 6.26GFRR19 pKa = 11.84QRR21 pKa = 11.84MSTKK25 pKa = 10.0NGRR28 pKa = 11.84KK29 pKa = 8.83ILAARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.84GRR39 pKa = 11.84KK40 pKa = 8.75VLSAA44 pKa = 4.05

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4048

0

4048

1205544

26

1562

297.8

33.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.702 ± 0.035

0.684 ± 0.011

5.158 ± 0.031

7.639 ± 0.05

4.729 ± 0.036

6.717 ± 0.034

2.1 ± 0.018

8.195 ± 0.041

6.867 ± 0.033

9.894 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.79 ± 0.019

4.387 ± 0.025

3.674 ± 0.02

4.065 ± 0.024

3.919 ± 0.025

5.797 ± 0.028

5.328 ± 0.023

6.51 ± 0.029

1.188 ± 0.017

3.657 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski