Pan troglodytes polyomavirus 4

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus

Average proteome isoelectric point is 7.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7QKH3|K7QKH3_9POLY Minor capsid protein OS=Pan troglodytes polyomavirus 4 OX=1891736 PE=3 SV=1
MM1 pKa = 7.47GGVLSIIVDD10 pKa = 4.37IIEE13 pKa = 4.02LTAEE17 pKa = 3.97VTAATGFSLEE27 pKa = 4.31AIINGEE33 pKa = 3.67ALAAVEE39 pKa = 4.4AQLSSLATVEE49 pKa = 4.17GLSGVEE55 pKa = 4.03ALASLGITTEE65 pKa = 4.02QYY67 pKa = 11.46SFLTSVPGMLSNAVGLGVVFQTVSGASALVSAGIATSYY105 pKa = 10.59AKK107 pKa = 10.13EE108 pKa = 3.83VSVVNRR114 pKa = 11.84NMALVPWRR122 pKa = 11.84DD123 pKa = 2.93PDD125 pKa = 3.7YY126 pKa = 11.54YY127 pKa = 11.05DD128 pKa = 3.18ILFPGVQSFSYY139 pKa = 10.2AINVVADD146 pKa = 3.62WSGSLFHH153 pKa = 7.57AIGRR157 pKa = 11.84YY158 pKa = 8.79IWDD161 pKa = 3.83TVTSEE166 pKa = 3.58ARR168 pKa = 11.84RR169 pKa = 11.84QIGHH173 pKa = 7.72ASNQVIVRR181 pKa = 11.84GTHH184 pKa = 6.53AFQDD188 pKa = 3.55SLARR192 pKa = 11.84ILEE195 pKa = 3.92NARR198 pKa = 11.84WVVQAGPTNIYY209 pKa = 10.79NFLDD213 pKa = 3.23NYY215 pKa = 10.15YY216 pKa = 10.67RR217 pKa = 11.84EE218 pKa = 4.71LPPVNPPQARR228 pKa = 11.84QMYY231 pKa = 9.35RR232 pKa = 11.84RR233 pKa = 11.84LGQKK237 pKa = 9.79YY238 pKa = 7.99RR239 pKa = 11.84FARR242 pKa = 11.84EE243 pKa = 3.82AYY245 pKa = 9.82QIPDD249 pKa = 3.79RR250 pKa = 11.84YY251 pKa = 10.88NLANSEE257 pKa = 4.38TEE259 pKa = 3.74SGEE262 pKa = 3.98TVEE265 pKa = 5.56FYY267 pKa = 10.85KK268 pKa = 10.99HH269 pKa = 6.39PGGANQRR276 pKa = 11.84VTPDD280 pKa = 2.51WMLPLILGLYY290 pKa = 10.53GDD292 pKa = 4.64ITPTWSTYY300 pKa = 6.34VHH302 pKa = 6.85EE303 pKa = 4.89IEE305 pKa = 5.82EE306 pKa = 4.25EE307 pKa = 4.12DD308 pKa = 3.49EE309 pKa = 4.32SQKK312 pKa = 10.88KK313 pKa = 9.04KK314 pKa = 9.72RR315 pKa = 11.84RR316 pKa = 11.84RR317 pKa = 11.84YY318 pKa = 9.21

Molecular weight: 35.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6XVL7|A0A5J6XVL7_9POLY Middle T antigen OS=Pan troglodytes polyomavirus 4 OX=1891736 PE=4 SV=1
MM1 pKa = 7.72GPRR4 pKa = 11.84NLRR7 pKa = 11.84SGGMHH12 pKa = 6.62NFHH15 pKa = 7.16PVHH18 pKa = 7.02PSTSAPQLTTDD29 pKa = 3.64EE30 pKa = 5.03EE31 pKa = 4.33EE32 pKa = 4.4DD33 pKa = 3.15PTYY36 pKa = 11.05IVMKK40 pKa = 10.28SLNPVMKK47 pKa = 9.97KK48 pKa = 10.44DD49 pKa = 3.67PQPAPKK55 pKa = 9.45PVSSDD60 pKa = 3.26EE61 pKa = 4.2EE62 pKa = 4.34RR63 pKa = 11.84PPTPPPRR70 pKa = 11.84RR71 pKa = 11.84IFSPLLPRR79 pKa = 11.84PRR81 pKa = 11.84RR82 pKa = 11.84VPLLHH87 pKa = 6.4MPEE90 pKa = 4.3IPGGTLPARR99 pKa = 11.84LTSPLTSLHH108 pKa = 6.49RR109 pKa = 11.84PPNVLPLNLLEE120 pKa = 6.15KK121 pKa = 10.31EE122 pKa = 4.08IQTLRR127 pKa = 11.84RR128 pKa = 11.84QVSLAHH134 pKa = 7.16RR135 pKa = 11.84RR136 pKa = 11.84RR137 pKa = 11.84QRR139 pKa = 11.84DD140 pKa = 3.25LKK142 pKa = 10.88FIMILSIFQILFLIILVMLYY162 pKa = 9.98IVIKK166 pKa = 10.36HH167 pKa = 5.54

Molecular weight: 19.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2108

167

730

351.3

40.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.602 ± 1.019

2.324 ± 0.608

5.455 ± 0.518

5.93 ± 0.359

4.317 ± 0.505

5.218 ± 0.77

2.277 ± 0.414

5.171 ± 0.384

6.072 ± 0.972

10.769 ± 0.904

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.226 ± 0.605

4.886 ± 0.473

7.258 ± 1.058

4.696 ± 0.274

5.977 ± 1.008

7.163 ± 0.671

4.934 ± 0.843

5.455 ± 0.85

1.091 ± 0.287

3.178 ± 0.409
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski