Soybean yellow mottle mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Gammacarmovirus

Average proteome isoelectric point is 8.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B7U998|B7U998_9TOMB Capsid protein OS=Soybean yellow mottle mosaic virus OX=578361 GN=CP PE=3 SV=1
MM1 pKa = 7.91PSTRR5 pKa = 11.84HH6 pKa = 5.19EE7 pKa = 4.43VNHH10 pKa = 6.24LAVITGVILLLWHH23 pKa = 6.71IRR25 pKa = 11.84SQSILILIFDD35 pKa = 5.61AIAPRR40 pKa = 11.84VTNITSAILLAIFYY54 pKa = 9.79CYY56 pKa = 10.7SNSTASIPYY65 pKa = 8.12ISQPVTHH72 pKa = 6.96SSTSKK77 pKa = 9.79IVYY80 pKa = 9.36IAVGTNPVAVSKK92 pKa = 11.28HH93 pKa = 4.4EE94 pKa = 3.9

Molecular weight: 10.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B7U997|B7U997_9TOMB p10 protein OS=Soybean yellow mottle mosaic virus OX=578361 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 5.63KK3 pKa = 10.79SPQRR7 pKa = 11.84GRR9 pKa = 11.84SRR11 pKa = 11.84SRR13 pKa = 11.84SRR15 pKa = 11.84QTQGPKK21 pKa = 10.41GPKK24 pKa = 9.3PEE26 pKa = 3.96NKK28 pKa = 9.35QIQVAHH34 pKa = 6.29HH35 pKa = 6.51AVDD38 pKa = 3.58KK39 pKa = 11.41ARR41 pKa = 11.84GKK43 pKa = 10.04PPGGDD48 pKa = 2.81HH49 pKa = 6.84GGDD52 pKa = 3.72FVIVAHH58 pKa = 5.76TVTVNINFNII68 pKa = 3.82

Molecular weight: 7.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1485

68

746

297.0

32.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.734 ± 1.104

1.953 ± 0.56

4.444 ± 0.547

3.502 ± 0.673

3.3 ± 0.766

6.465 ± 1.145

2.761 ± 0.761

4.916 ± 1.208

4.377 ± 0.692

9.832 ± 1.697

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.694 ± 0.451

5.185 ± 0.853

6.33 ± 0.85

3.771 ± 0.414

7.003 ± 0.577

8.754 ± 2.125

6.599 ± 1.602

7.205 ± 1.009

1.145 ± 0.244

2.963 ± 0.539
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski