Paracoccus jeotgali

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2977 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K9MI93|A0A2K9MI93_9RHOB ArsR family transcriptional regulator OS=Paracoccus jeotgali OX=2065379 GN=CYR75_13645 PE=4 SV=1
MM1 pKa = 7.76NITVLYY7 pKa = 8.67GTEE10 pKa = 3.88TGNAEE15 pKa = 4.04MLAEE19 pKa = 4.46DD20 pKa = 3.99VAAHH24 pKa = 6.55LEE26 pKa = 4.41GAHH29 pKa = 6.35EE30 pKa = 4.35VACTNLSDD38 pKa = 4.63FAPADD43 pKa = 3.65FDD45 pKa = 4.07PGQFYY50 pKa = 10.9LVICSTYY57 pKa = 11.15GDD59 pKa = 4.18GEE61 pKa = 4.44LPASAKK67 pKa = 10.11PFAEE71 pKa = 4.04AMEE74 pKa = 5.56AEE76 pKa = 4.5MPDD79 pKa = 3.26LAGVHH84 pKa = 5.9FAIFGLGDD92 pKa = 3.32TEE94 pKa = 5.68YY95 pKa = 11.01EE96 pKa = 4.05DD97 pKa = 3.4THH99 pKa = 7.76NFGSRR104 pKa = 11.84IIAEE108 pKa = 4.08MLQARR113 pKa = 11.84GASQIGEE120 pKa = 4.23RR121 pKa = 11.84VLHH124 pKa = 6.5DD125 pKa = 3.76ASGGDD130 pKa = 3.6MADD133 pKa = 3.98DD134 pKa = 5.18LAMDD138 pKa = 3.92WADD141 pKa = 3.6SVVEE145 pKa = 4.3LAAQQMKK152 pKa = 10.51EE153 pKa = 4.04DD154 pKa = 3.65AA155 pKa = 4.55

Molecular weight: 16.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K9MD89|A0A2K9MD89_9RHOB L D-transpeptidase OS=Paracoccus jeotgali OX=2065379 GN=CYR75_04275 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84TRR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.63GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.41AGRR29 pKa = 11.84LVLNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.7GRR40 pKa = 11.84KK41 pKa = 8.85RR42 pKa = 11.84LSAA45 pKa = 3.96

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2977

0

2977

950684

41

2627

319.3

34.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.981 ± 0.068

0.809 ± 0.015

6.227 ± 0.042

5.442 ± 0.039

3.448 ± 0.031

8.851 ± 0.046

2.05 ± 0.022

5.11 ± 0.032

2.496 ± 0.036

10.369 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.732 ± 0.021

2.306 ± 0.022

5.537 ± 0.034

3.467 ± 0.025

7.524 ± 0.046

4.981 ± 0.029

5.228 ± 0.026

7.021 ± 0.033

1.417 ± 0.019

2.004 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski