Jaminaea rosea

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Exobasidiomycetes; Microstromatales; Microstromatales incertae sedis; Jaminaea

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6858 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A316UKN2|A0A316UKN2_9BASI DUF1162-domain-containing protein OS=Jaminaea rosea OX=1569628 GN=BDZ90DRAFT_267720 PE=3 SV=1
MM1 pKa = 7.33SPSFSSLFAFAALATTSLASSVTLQNSCSYY31 pKa = 9.28PVWVRR36 pKa = 11.84DD37 pKa = 3.7SSPGANGRR45 pKa = 11.84IVRR48 pKa = 11.84VNANSPSTDD57 pKa = 3.03VTQGGAGFVLNLLTGCSDD75 pKa = 4.25DD76 pKa = 4.79SGNGCATGDD85 pKa = 3.66VGGGALPFGRR95 pKa = 11.84VEE97 pKa = 4.04ATFTDD102 pKa = 4.03TYY104 pKa = 11.49VNYY107 pKa = 10.29DD108 pKa = 3.43LSLEE112 pKa = 4.31YY113 pKa = 10.57GWNVPVEE120 pKa = 4.47IGAPSCPYY128 pKa = 9.66FACTSLPGCPVPGPDD143 pKa = 3.61GSCYY147 pKa = 10.69SPCCASADD155 pKa = 3.65NCQGTNSCPYY165 pKa = 7.43EE166 pKa = 4.06TRR168 pKa = 11.84DD169 pKa = 3.63NGPGGKK175 pKa = 9.5GVNSQYY181 pKa = 11.91YY182 pKa = 9.4MDD184 pKa = 4.42TCPNAYY190 pKa = 9.48AWPIEE195 pKa = 4.39DD196 pKa = 3.74SDD198 pKa = 4.31VPSAYY203 pKa = 9.33IDD205 pKa = 4.04TNCGNQDD212 pKa = 3.5LQINFCPPVGNSNIPRR228 pKa = 11.84SS229 pKa = 3.65

Molecular weight: 23.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A316US67|A0A316US67_9BASI Pseudouridine synthase OS=Jaminaea rosea OX=1569628 GN=BDZ90DRAFT_55210 PE=3 SV=1
MM1 pKa = 7.65NSALQDD7 pKa = 4.13AIKK10 pKa = 10.7NGQRR14 pKa = 11.84LKK16 pKa = 10.91KK17 pKa = 9.78ATTNDD22 pKa = 2.88RR23 pKa = 11.84SAPAVAGNAGGGGGGGGGGGGGAGGIAAAAAAARR57 pKa = 11.84TLASAPKK64 pKa = 10.21VPGTGGGSGGGGAAGLGGILAGGIPKK90 pKa = 10.53LKK92 pKa = 9.05PTGAAPAAPKK102 pKa = 10.1PPAASAPKK110 pKa = 9.86PPAAPGRR117 pKa = 11.84PVPPPTRR124 pKa = 11.84PSAPPAPPPPSRR136 pKa = 11.84PSAAAPPPPPPPGRR150 pKa = 11.84PAAPSAAAPPRR161 pKa = 11.84PPPPPPGRR169 pKa = 11.84SSPAVPPPPPPPARR183 pKa = 11.84PAAASPAAPAPPPPPPPGRR202 pKa = 11.84PAAAAPPPPSRR213 pKa = 11.84PSAAAPPPPPPPPAASSSAPARR235 pKa = 11.84GVPPPPSRR243 pKa = 11.84APAPPSRR250 pKa = 11.84PGAAPPAPPPPSTPARR266 pKa = 11.84GAVPPPPARR275 pKa = 11.84ASPISSAPPPPPSRR289 pKa = 11.84PASSAPPPPPPTRR302 pKa = 11.84SAAAAPAAPPPPPPSRR318 pKa = 11.84APAAAPPAPPPSRR331 pKa = 11.84APAAAPPTPPPSRR344 pKa = 11.84APAAPPPSRR353 pKa = 11.84SAAAAALPALNGAGSNGASRR373 pKa = 11.84SVSSTSISGGAAGKK387 pKa = 8.23TGRR390 pKa = 11.84IPSPPPTSGNLTFSPSSAFPPPRR413 pKa = 11.84AFAGSGASRR422 pKa = 11.84VYY424 pKa = 10.53PGGKK428 pKa = 7.54TRR430 pKa = 11.84GSTFDD435 pKa = 3.05WSTVGG440 pKa = 4.33

Molecular weight: 40.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6858

0

6858

3700262

50

4870

539.6

58.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.072 ± 0.033

1.022 ± 0.011

5.454 ± 0.022

6.068 ± 0.026

2.918 ± 0.019

8.036 ± 0.032

2.358 ± 0.013

3.518 ± 0.021

4.175 ± 0.025

8.696 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.897 ± 0.009

2.719 ± 0.013

6.42 ± 0.034

4.162 ± 0.018

6.923 ± 0.023

9.933 ± 0.048

5.588 ± 0.018

5.663 ± 0.02

1.292 ± 0.01

2.087 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski