Gordonia phage GMA6

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Bendigovirus; Gordonia virus GMA6

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 115 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K0NKV9|A0A0K0NKV9_9CAUD HNHc domain-containing protein OS=Gordonia phage GMA6 OX=1647285 GN=GMA6_89 PE=4 SV=1
MM1 pKa = 8.03GEE3 pKa = 4.11YY4 pKa = 10.03TCFNCRR10 pKa = 11.84KK11 pKa = 10.27GIDD14 pKa = 3.19WDD16 pKa = 3.84QYY18 pKa = 8.81SEE20 pKa = 4.15EE21 pKa = 4.25WFHH24 pKa = 8.18LEE26 pKa = 4.9SEE28 pKa = 4.36QSACNSDD35 pKa = 4.09DD36 pKa = 3.92SPGTSAEE43 pKa = 4.08PDD45 pKa = 3.04RR46 pKa = 11.84DD47 pKa = 3.56

Molecular weight: 5.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K0NLA6|A0A0K0NLA6_9CAUD Uncharacterized protein OS=Gordonia phage GMA6 OX=1647285 GN=GMA6_56 PE=4 SV=1
MM1 pKa = 7.83RR2 pKa = 11.84KK3 pKa = 8.81HH4 pKa = 5.48VHH6 pKa = 6.24PAPHH10 pKa = 6.13LVVITEE16 pKa = 4.04DD17 pKa = 3.56TKK19 pKa = 11.35EE20 pKa = 3.95GLAMLSRR27 pKa = 11.84KK28 pKa = 8.98IVLPVCDD35 pKa = 3.33RR36 pKa = 11.84RR37 pKa = 11.84LVEE40 pKa = 3.94RR41 pKa = 11.84QRR43 pKa = 11.84AQWRR47 pKa = 11.84RR48 pKa = 11.84AWTTGPEE55 pKa = 3.84RR56 pKa = 11.84GPKK59 pKa = 9.54YY60 pKa = 10.17EE61 pKa = 4.13YY62 pKa = 9.94PCWVCGEE69 pKa = 4.19LGEE72 pKa = 4.74IGVAGFGTKK81 pKa = 8.61GTLIRR86 pKa = 11.84PRR88 pKa = 11.84NFQHH92 pKa = 6.66ADD94 pKa = 3.16CYY96 pKa = 11.08EE97 pKa = 4.22SVDD100 pKa = 4.27EE101 pKa = 4.07YY102 pKa = 11.64QKK104 pKa = 10.38MIWRR108 pKa = 11.84IRR110 pKa = 11.84DD111 pKa = 3.51TKK113 pKa = 10.7HH114 pKa = 4.81VLRR117 pKa = 11.84RR118 pKa = 11.84AQRR121 pKa = 11.84RR122 pKa = 11.84KK123 pKa = 9.91SKK125 pKa = 10.49RR126 pKa = 11.84SYY128 pKa = 10.71DD129 pKa = 3.63RR130 pKa = 11.84EE131 pKa = 3.86ALRR134 pKa = 11.84QRR136 pKa = 11.84RR137 pKa = 11.84YY138 pKa = 10.96DD139 pKa = 3.61LGLDD143 pKa = 3.32TSTGKK148 pKa = 9.15QRR150 pKa = 11.84KK151 pKa = 8.46ARR153 pKa = 3.8

Molecular weight: 18.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

115

0

115

25834

41

1139

224.6

24.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.147 ± 0.27

0.964 ± 0.097

6.557 ± 0.251

6.329 ± 0.325

2.961 ± 0.139

8.473 ± 0.283

1.695 ± 0.127

4.568 ± 0.211

5.489 ± 0.221

7.366 ± 0.155

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.597 ± 0.147

4.088 ± 0.153

4.672 ± 0.187

3.476 ± 0.104

6.511 ± 0.239

6.375 ± 0.187

6.685 ± 0.23

7.269 ± 0.2

1.645 ± 0.134

3.132 ± 0.149
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski