Sediminibacterium ginsengisoli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Sediminibacterium

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3581 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4LGF0|A0A1T4LGF0_9BACT Uncharacterized membrane protein YgdD TMEM256/DUF423 family OS=Sediminibacterium ginsengisoli OX=413434 GN=SAMN04488132_102486 PE=3 SV=1
MM1 pKa = 7.73WIVLYY6 pKa = 10.94LGTNRR11 pKa = 11.84NFMQPQPLIEE21 pKa = 4.74LNSSGAAVIAWQLFLQKK38 pKa = 10.48NGYY41 pKa = 8.54NVSTADD47 pKa = 3.97GNFGPQTQAATMAFQTKK64 pKa = 10.4NGLTADD70 pKa = 3.97GVVGPGTYY78 pKa = 8.78TVAEE82 pKa = 4.11QQGFTGTAVQMADD95 pKa = 3.33FVGIDD100 pKa = 3.38VAHH103 pKa = 6.72YY104 pKa = 10.41DD105 pKa = 4.13SNDD108 pKa = 3.2GANPINWEE116 pKa = 4.23LVKK119 pKa = 10.37QDD121 pKa = 3.41PQNIKK126 pKa = 10.39FVFVKK131 pKa = 10.02ATDD134 pKa = 3.88GASGPNSVDD143 pKa = 2.89QTFATNVAGAGAVGLPVGAYY163 pKa = 9.42HH164 pKa = 7.46FYY166 pKa = 10.89EE167 pKa = 4.92LGSAATAQASNFITNTGNHH186 pKa = 5.81QLLTLPPVLDD196 pKa = 3.97FEE198 pKa = 5.29LPVAASAIQQTMDD211 pKa = 6.18DD212 pKa = 3.55INTWLEE218 pKa = 3.93QVEE221 pKa = 4.41KK222 pKa = 10.99AFGKK226 pKa = 8.79TPIIYY231 pKa = 7.81TNPNAWDD238 pKa = 3.59ALGNPSGFSKK248 pKa = 10.89YY249 pKa = 9.76PLWIADD255 pKa = 4.09YY256 pKa = 9.71NSSIAPPVLGSWPQWAFWQFTEE278 pKa = 4.17TGTVQGIVNPASMDD292 pKa = 3.3INHH295 pKa = 6.35YY296 pKa = 10.27NPASGILAVV305 pKa = 3.98

Molecular weight: 32.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4M5K7|A0A1T4M5K7_9BACT Gliding motility-associated protein GldC OS=Sediminibacterium ginsengisoli OX=413434 GN=SAMN04488132_103169 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.59RR3 pKa = 11.84TFQPHH8 pKa = 4.67KK9 pKa = 9.7RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.4SVHH16 pKa = 4.97GFRR19 pKa = 11.84KK20 pKa = 10.08RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 9.14VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.04GRR39 pKa = 11.84KK40 pKa = 8.7KK41 pKa = 10.08LTVSSEE47 pKa = 4.1KK48 pKa = 10.7GLKK51 pKa = 9.34

Molecular weight: 5.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3581

0

3581

1239871

30

3257

346.2

38.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.23 ± 0.046

0.883 ± 0.014

5.155 ± 0.029

5.587 ± 0.052

4.669 ± 0.034

6.926 ± 0.043

1.895 ± 0.023

6.763 ± 0.035

6.487 ± 0.049

9.441 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.466 ± 0.023

5.229 ± 0.051

3.918 ± 0.029

3.883 ± 0.029

4.551 ± 0.03

6.283 ± 0.042

5.994 ± 0.076

6.447 ± 0.037

1.214 ± 0.015

3.981 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski