Strawberry polerovirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus; unclassified Polerovirus

Average proteome isoelectric point is 7.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A097RN44|A0A097RN44_9LUTE Readthrough protein OS=Strawberry polerovirus 1 OX=1564903 PE=3 SV=1
MM1 pKa = 7.38FEE3 pKa = 4.27VKK5 pKa = 10.45FGYY8 pKa = 9.97LVPTLFEE15 pKa = 4.16VTDD18 pKa = 3.55LHH20 pKa = 7.23DD21 pKa = 3.99FADD24 pKa = 3.93AFDD27 pKa = 4.13AFEE30 pKa = 4.07GLRR33 pKa = 11.84FHH35 pKa = 7.52ALLQEE40 pKa = 3.83VRR42 pKa = 11.84KK43 pKa = 9.05YY44 pKa = 11.14NRR46 pKa = 11.84VGFSRR51 pKa = 11.84SNYY54 pKa = 10.06AVDD57 pKa = 3.91RR58 pKa = 11.84DD59 pKa = 3.84VNLAFIFYY67 pKa = 10.37LPLLTQPGNKK77 pKa = 8.47PQPGDD82 pKa = 3.7SFSVPLARR90 pKa = 11.84YY91 pKa = 8.02KK92 pKa = 10.51QLIKK96 pKa = 9.76WALAVGYY103 pKa = 9.67FPEE106 pKa = 4.76LRR108 pKa = 11.84EE109 pKa = 4.41LPTTVQVCCTHH120 pKa = 7.17RR121 pKa = 11.84STEE124 pKa = 3.4TDD126 pKa = 3.08YY127 pKa = 11.25RR128 pKa = 11.84RR129 pKa = 11.84KK130 pKa = 10.13LWEE133 pKa = 4.92LDD135 pKa = 3.47TADD138 pKa = 3.28VAKK141 pKa = 10.81DD142 pKa = 3.56VVGCKK147 pKa = 9.82HH148 pKa = 6.48LPLLGANTLANIMCQRR164 pKa = 11.84FKK166 pKa = 11.25LLQDD170 pKa = 3.2EE171 pKa = 4.36HH172 pKa = 8.08RR173 pKa = 11.84KK174 pKa = 9.15IVPITRR180 pKa = 11.84NARR183 pKa = 11.84FEE185 pKa = 3.98VHH187 pKa = 6.9HH188 pKa = 6.33IHH190 pKa = 7.21LVLCLKK196 pKa = 10.85DD197 pKa = 4.49DD198 pKa = 3.71MGFLMEE204 pKa = 5.42FDD206 pKa = 4.55YY207 pKa = 11.3EE208 pKa = 4.09PHH210 pKa = 6.44CRR212 pKa = 11.84RR213 pKa = 11.84FTLDD217 pKa = 2.86VARR220 pKa = 11.84RR221 pKa = 11.84LHH223 pKa = 6.42GFGFQRR229 pKa = 11.84SAMDD233 pKa = 3.03IFEE236 pKa = 4.37TSFLRR241 pKa = 11.84SDD243 pKa = 2.86ITMEE247 pKa = 4.39DD248 pKa = 3.4LEE250 pKa = 4.56AFYY253 pKa = 10.42PP254 pKa = 3.92

Molecular weight: 29.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A097RN38|A0A097RN38_9LUTE p0 OS=Strawberry polerovirus 1 OX=1564903 PE=4 SV=1
MM1 pKa = 7.54ARR3 pKa = 11.84RR4 pKa = 11.84PRR6 pKa = 11.84GSRR9 pKa = 11.84GGKK12 pKa = 9.11GKK14 pKa = 10.44KK15 pKa = 8.92KK16 pKa = 10.24QNAGRR21 pKa = 11.84RR22 pKa = 11.84NPSRR26 pKa = 11.84MARR29 pKa = 11.84PAQPIYY35 pKa = 10.63VVQRR39 pKa = 11.84PPNQGTGRR47 pKa = 11.84RR48 pKa = 11.84GRR50 pKa = 11.84RR51 pKa = 11.84NRR53 pKa = 11.84NRR55 pKa = 11.84RR56 pKa = 11.84LRR58 pKa = 11.84AQGYY62 pKa = 8.54GLGGKK67 pKa = 9.33HH68 pKa = 5.34EE69 pKa = 4.31TLKK72 pKa = 9.85FTKK75 pKa = 10.25EE76 pKa = 3.82DD77 pKa = 3.04IKK79 pKa = 11.14RR80 pKa = 11.84NSSGYY85 pKa = 7.97ITFGPSLSEE94 pKa = 4.34HH95 pKa = 6.52PAFSNGNLKK104 pKa = 10.32AYY106 pKa = 9.04KK107 pKa = 9.45HH108 pKa = 5.09YY109 pKa = 10.53RR110 pKa = 11.84ITRR113 pKa = 11.84INVEE117 pKa = 4.24YY118 pKa = 10.49LSEE121 pKa = 4.3STDD124 pKa = 3.52QAPGAIKK131 pKa = 10.63FEE133 pKa = 4.39MDD135 pKa = 3.0TSLSATKK142 pKa = 9.19VTSPIHH148 pKa = 6.15RR149 pKa = 11.84FPIKK153 pKa = 10.54KK154 pKa = 9.58NGRR157 pKa = 11.84YY158 pKa = 6.96TWTAPHH164 pKa = 6.97INGQLTRR171 pKa = 11.84EE172 pKa = 4.29TTSDD176 pKa = 2.92QCRR179 pKa = 11.84FLYY182 pKa = 10.42EE183 pKa = 3.8ATTTSTEE190 pKa = 3.82PAGVFNFTYY199 pKa = 10.2DD200 pKa = 3.29VHH202 pKa = 8.64LMDD205 pKa = 5.52NKK207 pKa = 10.96

Molecular weight: 23.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3155

185

1139

525.8

59.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.498 ± 0.39

1.585 ± 0.32

4.913 ± 0.435

6.022 ± 0.299

3.74 ± 0.534

5.769 ± 0.368

2.536 ± 0.188

4.976 ± 0.443

5.547 ± 0.31

8.336 ± 1.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.87 ± 0.178

4.216 ± 0.33

6.973 ± 0.715

3.518 ± 0.459

6.815 ± 0.857

9.002 ± 0.901

6.656 ± 0.596

5.42 ± 0.608

1.902 ± 0.228

3.708 ± 0.195
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski