Pseudolabrys taiwanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Pseudolabrys

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5199 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345ZXA0|A0A345ZXA0_9RHIZ Uncharacterized protein OS=Pseudolabrys taiwanensis OX=331696 GN=DW352_14100 PE=4 SV=1
MM1 pKa = 7.48TISSVSSAYY10 pKa = 10.13AAATASTSSTSSTDD24 pKa = 2.76SSMSLSTTDD33 pKa = 3.86FLQLIVTQLKK43 pKa = 8.91NQNPLDD49 pKa = 4.25PTDD52 pKa = 3.71PTQFMSQLVSYY63 pKa = 10.9ASYY66 pKa = 10.8DD67 pKa = 3.12QQTQMNSNLTSMVSSMNSLLTSNGIGYY94 pKa = 9.82IGQTVEE100 pKa = 4.45AKK102 pKa = 10.8GDD104 pKa = 3.76TTPLTGGQANWGYY117 pKa = 10.38SLSSAAASVNITVKK131 pKa = 10.5DD132 pKa = 3.64QNGNAVYY139 pKa = 7.56TTTGDD144 pKa = 3.39TAAGSHH150 pKa = 5.5TFTWDD155 pKa = 2.7GTTNSGGTAADD166 pKa = 3.25GDD168 pKa = 4.25YY169 pKa = 10.25TISVGAANASGSSVLDD185 pKa = 3.46YY186 pKa = 8.31TTVIGKK192 pKa = 7.83VTGVDD197 pKa = 3.63STSGTSQLLIGDD209 pKa = 3.89TTVALTSVVGVKK221 pKa = 9.68SANN224 pKa = 3.23

Molecular weight: 22.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346A3H3|A0A346A3H3_9RHIZ ABC transporter substrate-binding protein OS=Pseudolabrys taiwanensis OX=331696 GN=DW352_26240 PE=4 SV=1
MM1 pKa = 7.32VLPSAPPPPPPRR13 pKa = 11.84SRR15 pKa = 11.84PPPLPPRR22 pKa = 11.84SRR24 pKa = 11.84PPPPRR29 pKa = 11.84RR30 pKa = 11.84PQRR33 pKa = 11.84PRR35 pKa = 11.84RR36 pKa = 11.84PSRR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84CRR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84PRR47 pKa = 11.84PPQPRR52 pKa = 11.84PPLPPISYY60 pKa = 10.14RR61 pKa = 3.5

Molecular weight: 7.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5199

0

5199

1630845

29

6358

313.7

34.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.79 ± 0.048

0.823 ± 0.011

5.501 ± 0.027

5.229 ± 0.035

3.742 ± 0.027

8.385 ± 0.038

1.998 ± 0.017

5.211 ± 0.024

3.851 ± 0.033

9.843 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.463 ± 0.018

2.754 ± 0.023

5.344 ± 0.032

3.131 ± 0.024

6.877 ± 0.038

5.149 ± 0.029

5.505 ± 0.039

7.754 ± 0.029

1.301 ± 0.015

2.349 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski