Macaca fascicularis papillomavirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 12

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3PU82|C3PU82_RHPV1 Replication protein E1 OS=Macaca fascicularis papillomavirus 6 OX=471184 GN=E1 PE=3 SV=1
MM1 pKa = 7.69IGPKK5 pKa = 8.62PTLQDD10 pKa = 2.85IVLTSQPEE18 pKa = 4.12PQPEE22 pKa = 4.11PVDD25 pKa = 4.12LMCHH29 pKa = 5.08EE30 pKa = 5.06HH31 pKa = 7.51LSDD34 pKa = 3.65SSEE37 pKa = 4.57DD38 pKa = 3.52EE39 pKa = 4.94DD40 pKa = 5.92EE41 pKa = 4.62IDD43 pKa = 2.92HH44 pKa = 6.75HH45 pKa = 8.28YY46 pKa = 10.79EE47 pKa = 4.28DD48 pKa = 5.1RR49 pKa = 11.84LEE51 pKa = 4.09EE52 pKa = 3.92QQLYY56 pKa = 10.49RR57 pKa = 11.84ILSACAHH64 pKa = 6.66CGSAVRR70 pKa = 11.84LVVSSTHH77 pKa = 6.91SEE79 pKa = 4.24VQVLQQLLMGNLEE92 pKa = 4.31IVCPSCAGRR101 pKa = 11.84AA102 pKa = 3.49

Molecular weight: 11.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3PU86|C3PU86_RHPV1 Minor capsid protein L2 OS=Macaca fascicularis papillomavirus 6 OX=471184 GN=L2 PE=3 SV=1
TT1 pKa = 7.36AKK3 pKa = 10.11ILLFIVIFLFLFFLGLVVCARR24 pKa = 11.84LEE26 pKa = 4.16SLVLCLCVYY35 pKa = 11.04AKK37 pKa = 10.78VLLLMLLFWVTIVPPFSAFALCFVCFLLPLLFIHH71 pKa = 6.52LHH73 pKa = 5.63ALSVVNSRR81 pKa = 11.84QQ82 pKa = 3.09

Molecular weight: 9.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2394

82

631

299.3

33.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.475 ± 0.514

2.799 ± 0.621

5.556 ± 0.681

5.639 ± 0.831

3.759 ± 0.524

6.14 ± 0.468

2.966 ± 0.369

3.926 ± 0.507

5.18 ± 1.1

9.607 ± 0.998

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.796 ± 0.292

3.342 ± 0.695

6.6 ± 1.384

4.553 ± 0.41

5.263 ± 0.515

7.435 ± 0.41

6.266 ± 0.947

7.686 ± 0.534

1.378 ± 0.384

3.634 ± 0.432
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski