Wenzhouxiangella sp. XN24

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Wenzhouxiangellaceae; Wenzhouxiangella; unclassified Wenzhouxiangella

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3004 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M1Y5S4|A0A6M1Y5S4_9GAMM MMPL family transporter OS=Wenzhouxiangella sp. XN24 OX=2713569 GN=G6032_05130 PE=4 SV=1
MM1 pKa = 7.36RR2 pKa = 11.84TFASTLALAAALGLAAPAYY21 pKa = 9.94AHH23 pKa = 6.9EE24 pKa = 4.92AGDD27 pKa = 3.34WLVRR31 pKa = 11.84FGGSNIDD38 pKa = 3.59PKK40 pKa = 11.12SDD42 pKa = 3.43NGSLDD47 pKa = 3.22LTAAGLEE54 pKa = 4.51GVAVQDD60 pKa = 3.93VNVDD64 pKa = 3.5SQIGVTFNITYY75 pKa = 8.84MYY77 pKa = 8.09TANLGIEE84 pKa = 4.44LLAALPYY91 pKa = 10.27EE92 pKa = 4.38HH93 pKa = 7.59DD94 pKa = 3.84IEE96 pKa = 4.74VAGLPGTAATVTHH109 pKa = 6.92LPPTLSLQYY118 pKa = 10.72HH119 pKa = 6.1FMPDD123 pKa = 3.08AVFQPYY129 pKa = 9.83VGAGLNLTWFLDD141 pKa = 3.74DD142 pKa = 4.14SKK144 pKa = 11.86EE145 pKa = 4.1EE146 pKa = 4.06GLVAADD152 pKa = 4.02GLLGATTGLDD162 pKa = 3.23VDD164 pKa = 4.24STSVGLAAQVGFDD177 pKa = 4.2YY178 pKa = 10.73IVNDD182 pKa = 3.07TWFINFDD189 pKa = 3.67VRR191 pKa = 11.84WIDD194 pKa = 2.99ISTDD198 pKa = 2.85ATLTVDD204 pKa = 3.57GADD207 pKa = 3.41FSTAKK212 pKa = 10.37VDD214 pKa = 3.21IDD216 pKa = 4.25PIVYY220 pKa = 9.88GLHH223 pKa = 5.24IGYY226 pKa = 9.94RR227 pKa = 11.84FF228 pKa = 3.18

Molecular weight: 24.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M1YDS7|A0A6M1YDS7_9GAMM Uncharacterized protein OS=Wenzhouxiangella sp. XN24 OX=2713569 GN=G6032_14655 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.28QPSNLRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.16RR14 pKa = 11.84THH16 pKa = 5.96GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.24NGRR28 pKa = 11.84LVLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.38GRR39 pKa = 11.84ARR41 pKa = 11.84LAVV44 pKa = 3.42

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3004

0

3004

1008693

37

3642

335.8

36.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.552 ± 0.063

0.835 ± 0.015

5.843 ± 0.038

6.488 ± 0.04

3.607 ± 0.03

8.735 ± 0.045

2.071 ± 0.022

4.468 ± 0.032

2.234 ± 0.033

10.951 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.243 ± 0.021

2.28 ± 0.021

5.332 ± 0.033

3.066 ± 0.024

8.097 ± 0.048

5.026 ± 0.028

4.786 ± 0.034

7.669 ± 0.041

1.473 ± 0.019

2.244 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski