Capnocytophaga canimorsus (strain 5)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga canimorsus

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2394 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9YR50|F9YR50_CAPCC Uncharacterized protein OS=Capnocytophaga canimorsus (strain 5) OX=860228 GN=Ccan_02860 PE=4 SV=1
MM1 pKa = 7.6IYY3 pKa = 10.27KK4 pKa = 9.97FRR6 pKa = 11.84VILDD10 pKa = 3.41VKK12 pKa = 10.46EE13 pKa = 4.09DD14 pKa = 3.83VIRR17 pKa = 11.84DD18 pKa = 3.41IAIEE22 pKa = 4.18GTANLEE28 pKa = 4.14DD29 pKa = 3.85LHH31 pKa = 8.29NVITQAFGFAGDD43 pKa = 3.92EE44 pKa = 4.02MASFYY49 pKa = 11.17LSDD52 pKa = 4.88DD53 pKa = 3.52DD54 pKa = 4.21WNQGEE59 pKa = 5.04EE60 pKa = 3.78ITLFDD65 pKa = 4.25LSEE68 pKa = 4.34NGEE71 pKa = 4.08TRR73 pKa = 11.84LMQEE77 pKa = 3.74EE78 pKa = 4.48TIEE81 pKa = 4.14NVVDD85 pKa = 3.48EE86 pKa = 5.09DD87 pKa = 4.17QPKK90 pKa = 10.4LLYY93 pKa = 10.82VYY95 pKa = 10.57DD96 pKa = 4.78FFNMWTFFVEE106 pKa = 4.42LKK108 pKa = 10.37EE109 pKa = 4.17ISQEE113 pKa = 4.22TEE115 pKa = 3.91SLSYY119 pKa = 10.0PALLFAHH126 pKa = 6.73GSIPAEE132 pKa = 3.76APEE135 pKa = 4.63KK136 pKa = 10.93NFEE139 pKa = 4.12SDD141 pKa = 3.91DD142 pKa = 3.78FNEE145 pKa = 4.59FEE147 pKa = 6.01DD148 pKa = 4.13EE149 pKa = 4.96FSDD152 pKa = 4.28FDD154 pKa = 4.27MDD156 pKa = 3.76EE157 pKa = 3.9EE158 pKa = 5.78DD159 pKa = 3.71YY160 pKa = 11.96GEE162 pKa = 4.65FGYY165 pKa = 11.37GDD167 pKa = 3.6DD168 pKa = 5.76DD169 pKa = 4.07YY170 pKa = 12.01RR171 pKa = 11.84EE172 pKa = 4.42DD173 pKa = 4.0YY174 pKa = 10.6YY175 pKa = 11.92

Molecular weight: 20.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9YT24|F9YT24_CAPCC Uncharacterized protein OS=Capnocytophaga canimorsus (strain 5) OX=860228 GN=Ccan_06460 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2394

0

2394

753055

37

5042

314.6

35.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.264 ± 0.053

0.811 ± 0.02

5.031 ± 0.034

6.731 ± 0.063

5.428 ± 0.051

6.088 ± 0.047

1.882 ± 0.026

7.774 ± 0.044

8.114 ± 0.062

9.194 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.224 ± 0.024

5.812 ± 0.044

3.407 ± 0.035

4.194 ± 0.04

3.691 ± 0.037

6.132 ± 0.035

5.626 ± 0.076

6.293 ± 0.043

1.096 ± 0.019

4.207 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski