Chandiru virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Phlebovirus; Candiru phlebovirus

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2W3Q3|F2W3Q3_9VIRU Nonstructural protein OS=Chandiru virus OX=629725 PE=4 SV=1
MM1 pKa = 7.93SNMLNNVFDD10 pKa = 3.97IPHH13 pKa = 6.19ITRR16 pKa = 11.84SATDD20 pKa = 3.22RR21 pKa = 11.84SKK23 pKa = 11.57VYY25 pKa = 10.74VEE27 pKa = 3.76YY28 pKa = 10.58SAYY31 pKa = 9.99NGYY34 pKa = 9.32WGTPICRR41 pKa = 11.84YY42 pKa = 9.78KK43 pKa = 10.84GAEE46 pKa = 4.29FPCSSFTVSDD56 pKa = 3.33KK57 pKa = 10.84TSFRR61 pKa = 11.84LRR63 pKa = 11.84SFIDD67 pKa = 3.03KK68 pKa = 10.62GQLPRR73 pKa = 11.84SWGKK77 pKa = 9.57PFLQVKK83 pKa = 9.59GKK85 pKa = 10.26SPSFFDD91 pKa = 3.31TTIEE95 pKa = 4.51KK96 pKa = 9.97ISHH99 pKa = 6.52LNLEE103 pKa = 4.68RR104 pKa = 11.84QLKK107 pKa = 8.9WSEE110 pKa = 4.12PNLKK114 pKa = 9.92EE115 pKa = 4.11ALSWPLGVPTLAFFKK130 pKa = 10.8LSLVEE135 pKa = 4.31SYY137 pKa = 10.81EE138 pKa = 4.2FNWEE142 pKa = 4.1EE143 pKa = 4.05KK144 pKa = 10.17CFLMTLIMRR153 pKa = 11.84SGDD156 pKa = 3.18GAQIDD161 pKa = 3.99DD162 pKa = 4.52SLVNLYY168 pKa = 10.46KK169 pKa = 10.75KK170 pKa = 10.69LIRR173 pKa = 11.84EE174 pKa = 4.05LGEE177 pKa = 4.03RR178 pKa = 11.84DD179 pKa = 3.46IPCLNFTGQNIEE191 pKa = 4.0KK192 pKa = 9.61EE193 pKa = 3.86IAYY196 pKa = 9.34VQVLRR201 pKa = 11.84MLTALPYY208 pKa = 10.31DD209 pKa = 4.01YY210 pKa = 11.08YY211 pKa = 11.1EE212 pKa = 5.13SDD214 pKa = 3.74FHH216 pKa = 8.58SSLYY220 pKa = 10.77DD221 pKa = 3.52YY222 pKa = 11.14VKK224 pKa = 10.47EE225 pKa = 3.83LSEE228 pKa = 4.7VITPHH233 pKa = 7.08LLGNRR238 pKa = 11.84KK239 pKa = 6.41WTPLHH244 pKa = 5.75TMSPRR249 pKa = 11.84YY250 pKa = 8.23TRR252 pKa = 11.84IADD255 pKa = 3.47SWDD258 pKa = 3.26SDD260 pKa = 3.74LDD262 pKa = 3.8SEE264 pKa = 5.02EE265 pKa = 5.14DD266 pKa = 3.63MEE268 pKa = 6.22IDD270 pKa = 3.88GPAARR275 pKa = 11.84WGEE278 pKa = 4.33GNN280 pKa = 3.61

Molecular weight: 32.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2W3Q3|F2W3Q3_9VIRU Nonstructural protein OS=Chandiru virus OX=629725 PE=4 SV=1
MM1 pKa = 8.05SYY3 pKa = 10.78EE4 pKa = 4.0KK5 pKa = 10.71LAVDD9 pKa = 4.1IAGHH13 pKa = 6.45EE14 pKa = 4.11IDD16 pKa = 5.31ADD18 pKa = 4.22TIKK21 pKa = 10.88AWVQAFAYY29 pKa = 10.12QGFDD33 pKa = 2.93AKK35 pKa = 10.46RR36 pKa = 11.84VMEE39 pKa = 4.34LLVEE43 pKa = 4.34RR44 pKa = 11.84GGDD47 pKa = 3.5DD48 pKa = 2.96WVEE51 pKa = 4.08DD52 pKa = 3.91AKK54 pKa = 11.56QMIILCLTRR63 pKa = 11.84GNKK66 pKa = 7.9PSKK69 pKa = 10.39MMVKK73 pKa = 9.95MSEE76 pKa = 3.84KK77 pKa = 10.19GKK79 pKa = 10.72KK80 pKa = 8.77IVQALVKK87 pKa = 10.1RR88 pKa = 11.84YY89 pKa = 8.3SLKK92 pKa = 10.6EE93 pKa = 4.01GNPSRR98 pKa = 11.84DD99 pKa = 3.73DD100 pKa = 3.48LTLSRR105 pKa = 11.84VTAALAGYY113 pKa = 6.71TCQATEE119 pKa = 4.08YY120 pKa = 10.23VEE122 pKa = 4.87EE123 pKa = 4.16FLPVTGKK130 pKa = 10.35NMDD133 pKa = 4.67DD134 pKa = 3.44LSKK137 pKa = 10.8NYY139 pKa = 8.62PRR141 pKa = 11.84AMMHH145 pKa = 6.7PSFAGLIDD153 pKa = 4.3PKK155 pKa = 10.81LPPDD159 pKa = 3.93VLSTICDD166 pKa = 3.36AFSLFMVQFSRR177 pKa = 11.84TINPRR182 pKa = 11.84NRR184 pKa = 11.84GLSVSEE190 pKa = 4.14VASTFDD196 pKa = 3.54RR197 pKa = 11.84PINAAMNSSFISGEE211 pKa = 3.72QRR213 pKa = 11.84KK214 pKa = 9.36SFLRR218 pKa = 11.84NLGILDD224 pKa = 4.11EE225 pKa = 4.86NMQPSNPVKK234 pKa = 10.34AAAKK238 pKa = 9.76VFRR241 pKa = 11.84GLKK244 pKa = 9.69

Molecular weight: 27.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

3932

244

2088

983.0

111.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.705 ± 0.556

2.721 ± 0.762

5.722 ± 0.606

6.943 ± 0.268

4.73 ± 0.202

5.977 ± 0.421

2.314 ± 0.275

7.35 ± 0.586

7.248 ± 0.288

8.85 ± 0.208

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.077 ± 0.321

4.171 ± 0.399

3.662 ± 0.379

3.077 ± 0.245

4.959 ± 0.162

9.613 ± 0.255

4.807 ± 0.365

5.671 ± 0.191

1.348 ± 0.18

3.052 ± 0.238
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski