Chryseobacterium koreense CCUG 49689

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; Chryseobacterium koreense

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2784 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0J7IWN2|A0A0J7IWN2_9FLAO Uncharacterized protein OS=Chryseobacterium koreense CCUG 49689 OX=1304281 GN=ACM44_13290 PE=4 SV=1
MM1 pKa = 7.7AEE3 pKa = 4.45SGLACLPEE11 pKa = 4.34GRR13 pKa = 11.84WFSLARR19 pKa = 11.84VSLEE23 pKa = 3.98GVSVADD29 pKa = 4.31DD30 pKa = 4.02FSNGLVGDD38 pKa = 3.8PHH40 pKa = 7.98VGAEE44 pKa = 3.9FLYY47 pKa = 11.02GEE49 pKa = 4.26EE50 pKa = 4.08LVFGFVEE57 pKa = 4.82GGLDD61 pKa = 3.92FQDD64 pKa = 3.14QVAAVAFTFAGDD76 pKa = 3.51EE77 pKa = 4.17LDD79 pKa = 4.07VFGIDD84 pKa = 4.17ADD86 pKa = 4.33AGSSWFHH93 pKa = 6.09RR94 pKa = 11.84CSFLCC99 pKa = 4.68

Molecular weight: 10.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0J7IYC1|A0A0J7IYC1_9FLAO Uncharacterized protein OS=Chryseobacterium koreense CCUG 49689 OX=1304281 GN=ACM44_09225 PE=4 SV=1
MM1 pKa = 7.44VKK3 pKa = 10.34FNPQIYY9 pKa = 9.92GNLGEE14 pKa = 4.18EE15 pKa = 3.95FRR17 pKa = 11.84PFFSRR22 pKa = 11.84KK23 pKa = 8.14TILNNCVGFQKK34 pKa = 10.56NQNSFNFRR42 pKa = 11.84VNKK45 pKa = 7.39TKK47 pKa = 10.43CRR49 pKa = 11.84EE50 pKa = 3.7FFFRR54 pKa = 11.84RR55 pKa = 11.84VHH57 pKa = 6.44GKK59 pKa = 6.82TT60 pKa = 3.12

Molecular weight: 7.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2784

0

2784

869067

39

2401

312.2

35.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.438 ± 0.053

0.73 ± 0.014

5.302 ± 0.036

6.812 ± 0.056

5.608 ± 0.047

6.412 ± 0.045

1.721 ± 0.021

7.743 ± 0.052

8.2 ± 0.056

9.072 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.451 ± 0.024

6.085 ± 0.045

3.54 ± 0.025

3.601 ± 0.033

3.566 ± 0.031

6.334 ± 0.037

5.389 ± 0.049

6.056 ± 0.036

1.018 ± 0.018

3.922 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski