Penaeus monodon circovirus VN11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U6BMM7|U6BMM7_9CIRC Nonstructural protein 2 OS=Penaeus monodon circovirus VN11 OX=1419711 PE=4 SV=1
MM1 pKa = 7.47VVEE4 pKa = 4.29PAGDD8 pKa = 3.61HH9 pKa = 6.13LRR11 pKa = 11.84AARR14 pKa = 11.84AGHH17 pKa = 6.3AGWGEE22 pKa = 3.84EE23 pKa = 3.91GLNLNDD29 pKa = 3.77CRR31 pKa = 11.84QDD33 pKa = 3.29AVLVKK38 pKa = 9.98QAAKK42 pKa = 10.6LLVVDD47 pKa = 6.01DD48 pKa = 3.66ISEE51 pKa = 4.26RR52 pKa = 11.84KK53 pKa = 10.0DD54 pKa = 3.22EE55 pKa = 4.42SLVSTVASDD64 pKa = 3.56CDD66 pKa = 4.01TRR68 pKa = 11.84CAPAANLLGPPVVRR82 pKa = 11.84LDD84 pKa = 3.58ALEE87 pKa = 4.0VANIRR92 pKa = 11.84VAGEE96 pKa = 3.95PVHH99 pKa = 5.83VAVVEE104 pKa = 3.95LACLCGHH111 pKa = 7.19ALVALLLVVALLPIRR126 pKa = 11.84AAKK129 pKa = 10.42ASLCCVRR136 pKa = 11.84APAEE140 pKa = 4.03RR141 pKa = 11.84HH142 pKa = 5.71HH143 pKa = 7.11LSLL146 pKa = 5.55

Molecular weight: 15.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U6BML2|U6BML2_9CIRC Replication-associated protein OS=Penaeus monodon circovirus VN11 OX=1419711 PE=4 SV=1
MM1 pKa = 7.66PLRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84TYY8 pKa = 6.76TAKK11 pKa = 10.24RR12 pKa = 11.84RR13 pKa = 11.84FGRR16 pKa = 11.84SYY18 pKa = 10.85RR19 pKa = 11.84KK20 pKa = 9.56KK21 pKa = 10.13SYY23 pKa = 10.39YY24 pKa = 9.72KK25 pKa = 9.23KK26 pKa = 10.38KK27 pKa = 9.92SYY29 pKa = 11.0KK30 pKa = 10.29RR31 pKa = 11.84MAAKK35 pKa = 9.87ARR37 pKa = 11.84KK38 pKa = 8.18FNNGNVHH45 pKa = 7.04RR46 pKa = 11.84FTRR49 pKa = 11.84YY50 pKa = 9.79SNVGYY55 pKa = 9.66LEE57 pKa = 4.43CVQPYY62 pKa = 10.38DD63 pKa = 2.87WGAQEE68 pKa = 4.23VGGGGAPGVAITGHH82 pKa = 6.41CANKK86 pKa = 10.44AFVFSLTDD94 pKa = 3.28VVHH97 pKa = 6.77NEE99 pKa = 3.9EE100 pKa = 4.55FGSLFDD106 pKa = 3.66QYY108 pKa = 11.03RR109 pKa = 11.84ILSAVVEE116 pKa = 4.32IQPLLTPASMTGTGGTQMIARR137 pKa = 11.84WFYY140 pKa = 11.7DD141 pKa = 3.18HH142 pKa = 7.89DD143 pKa = 5.45DD144 pKa = 4.13DD145 pKa = 5.12STLGMSGADD154 pKa = 3.12ADD156 pKa = 4.58EE157 pKa = 4.43YY158 pKa = 10.04WGQRR162 pKa = 11.84APLVKK167 pKa = 9.29EE168 pKa = 4.02TPFRR172 pKa = 11.84FDD174 pKa = 3.31RR175 pKa = 11.84PIVIPVIPTTQTMTPQDD192 pKa = 4.45DD193 pKa = 4.34GNVYY197 pKa = 10.82APVPGSTYY205 pKa = 10.53KK206 pKa = 10.63KK207 pKa = 10.58RR208 pKa = 11.84MWLDD212 pKa = 2.97MTFPDD217 pKa = 4.13VPHH220 pKa = 6.74YY221 pKa = 10.45GLKK224 pKa = 10.28FQVLRR229 pKa = 11.84RR230 pKa = 11.84AQLAAEE236 pKa = 4.39VGPIAQYY243 pKa = 9.98RR244 pKa = 11.84IKK246 pKa = 11.2YY247 pKa = 9.28NLEE250 pKa = 3.84FKK252 pKa = 10.83NPRR255 pKa = 3.35

Molecular weight: 29.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

667

146

266

222.3

25.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.096 ± 3.216

2.099 ± 0.892

5.247 ± 0.409

6.297 ± 1.483

3.748 ± 1.2

7.346 ± 0.615

2.849 ± 0.475

4.048 ± 0.887

6.297 ± 1.297

7.946 ± 2.278

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.849 ± 0.726

3.448 ± 0.24

5.697 ± 0.458

2.999 ± 0.665

6.747 ± 0.803

4.348 ± 0.096

5.547 ± 1.342

8.246 ± 1.771

1.949 ± 0.582

4.198 ± 1.393
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski