Sesame yellow mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Turncurtovirus; unclassified Turncurtovirus

Average proteome isoelectric point is 7.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z4FSB4|A0A2Z4FSB4_9GEMI Replication enhancer OS=Sesame yellow mosaic virus OX=2231646 PE=3 SV=1
MM1 pKa = 7.76AYY3 pKa = 9.26SAPRR7 pKa = 11.84IVVPIRR13 pKa = 11.84AFSYY17 pKa = 9.79KK18 pKa = 9.7KK19 pKa = 10.07RR20 pKa = 11.84RR21 pKa = 11.84FYY23 pKa = 11.1SLKK26 pKa = 9.9EE27 pKa = 3.66FLFAPLEE34 pKa = 4.19ALLKK38 pKa = 11.09SGDD41 pKa = 4.01FPVGDD46 pKa = 3.7YY47 pKa = 11.34RR48 pKa = 11.84EE49 pKa = 4.2FDD51 pKa = 3.84LDD53 pKa = 3.8NLIEE57 pKa = 4.68FYY59 pKa = 10.69RR60 pKa = 11.84SEE62 pKa = 3.82NRR64 pKa = 11.84SIKK67 pKa = 10.3EE68 pKa = 3.93LFEE71 pKa = 5.0DD72 pKa = 4.41EE73 pKa = 4.48YY74 pKa = 11.05VVRR77 pKa = 11.84RR78 pKa = 11.84EE79 pKa = 3.87EE80 pKa = 4.35GKK82 pKa = 9.87DD83 pKa = 3.1AVYY86 pKa = 10.05PRR88 pKa = 11.84VRR90 pKa = 11.84PEE92 pKa = 3.69EE93 pKa = 4.13PLPVQEE99 pKa = 4.52VRR101 pKa = 11.84RR102 pKa = 11.84KK103 pKa = 9.24EE104 pKa = 3.87IPISDD109 pKa = 4.39SEE111 pKa = 4.8CPCCSKK117 pKa = 10.92EE118 pKa = 4.1KK119 pKa = 10.87GVDD122 pKa = 3.56EE123 pKa = 4.49VV124 pKa = 3.8

Molecular weight: 14.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z4FRS8|A0A2Z4FRS8_9GEMI C2 OS=Sesame yellow mosaic virus OX=2231646 PE=3 SV=1
MM1 pKa = 7.66KK2 pKa = 9.68MGNLISTCLSNSKK15 pKa = 10.14ARR17 pKa = 11.84SSSITPVISTYY28 pKa = 10.93GILVPAEE35 pKa = 3.82TSIQISRR42 pKa = 11.84EE43 pKa = 4.0LNPAPMSSPISRR55 pKa = 11.84RR56 pKa = 11.84TEE58 pKa = 3.51ISSTGVNFRR67 pKa = 11.84SMEE70 pKa = 4.25DD71 pKa = 3.19LQEE74 pKa = 4.11EE75 pKa = 4.68VNRR78 pKa = 11.84RR79 pKa = 11.84LMMHH83 pKa = 5.87VRR85 pKa = 11.84RR86 pKa = 11.84HH87 pKa = 4.44

Molecular weight: 9.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1128

87

373

188.0

21.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.433 ± 0.499

1.507 ± 0.257

5.053 ± 0.485

5.94 ± 1.608

4.787 ± 0.54

5.762 ± 0.6

2.926 ± 0.778

6.383 ± 0.433

6.56 ± 0.593

7.181 ± 0.879

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.837 ± 1.044

5.319 ± 0.651

6.294 ± 0.62

3.901 ± 0.971

6.56 ± 1.225

8.156 ± 0.833

5.319 ± 1.064

5.496 ± 0.924

1.684 ± 0.42

3.901 ± 0.393
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski