Salmonella phage Jersey

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus Jersey

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4X5B5|S4X5B5_9CAUD Uncharacterized protein OS=Salmonella phage Jersey OX=1340534 GN=Jersey_66 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 10.29VYY4 pKa = 10.12IVSGCNSYY12 pKa = 11.03GDD14 pKa = 4.02HH15 pKa = 6.33YY16 pKa = 11.58VLGVYY21 pKa = 10.21RR22 pKa = 11.84SEE24 pKa = 4.42EE25 pKa = 3.95EE26 pKa = 3.92AEE28 pKa = 3.9AAAEE32 pKa = 4.07RR33 pKa = 11.84EE34 pKa = 4.33RR35 pKa = 11.84NYY37 pKa = 10.64HH38 pKa = 6.34RR39 pKa = 11.84DD40 pKa = 3.57SVDD43 pKa = 3.09VCEE46 pKa = 4.93WEE48 pKa = 4.22VQEE51 pKa = 4.76

Molecular weight: 5.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4WY42|S4WY42_9CAUD Uncharacterized protein OS=Salmonella phage Jersey OX=1340534 GN=Jersey_65 PE=4 SV=1
MM1 pKa = 7.52SLATDD6 pKa = 3.7ILKK9 pKa = 10.24HH10 pKa = 6.28AGINLAPPSSAVTKK24 pKa = 10.32KK25 pKa = 7.19VTRR28 pKa = 11.84VKK30 pKa = 10.37EE31 pKa = 3.69KK32 pKa = 10.66ARR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 8.64PKK38 pKa = 10.19PRR40 pKa = 11.84VKK42 pKa = 10.0PVNEE46 pKa = 4.14MPDD49 pKa = 3.55VYY51 pKa = 10.73PRR53 pKa = 11.84IPGVHH58 pKa = 4.6QPKK61 pKa = 9.16YY62 pKa = 10.53CVGKK66 pKa = 10.16GLWRR70 pKa = 11.84AHH72 pKa = 6.43SYY74 pKa = 10.54DD75 pKa = 3.01GKK77 pKa = 10.98KK78 pKa = 10.05VVNLGEE84 pKa = 4.41FGSQARR90 pKa = 11.84AHH92 pKa = 5.3MAVRR96 pKa = 11.84KK97 pKa = 7.72WW98 pKa = 3.05

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

13504

29

852

195.7

21.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.686 ± 0.574

1.118 ± 0.151

5.88 ± 0.262

6.687 ± 0.376

3.799 ± 0.15

7.62 ± 0.275

1.748 ± 0.165

5.11 ± 0.205

6.124 ± 0.285

7.442 ± 0.257

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.168

4.354 ± 0.219

3.947 ± 0.213

3.68 ± 0.285

5.798 ± 0.253

5.961 ± 0.239

6.272 ± 0.324

7.376 ± 0.323

1.414 ± 0.146

3.429 ± 0.158
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski