Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / JCM 9101 / NCIMB 13204 / VKM B-1734 / 4k) (Halococcus turkmenicus)

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena; Haloterrigena turkmenica

Average proteome isoelectric point is 4.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5113 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D2S1U6|D2S1U6_HALTV Uncharacterized protein OS=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / JCM 9101 / NCIMB 13204 / VKM B-1734 / 4k) OX=543526 GN=Htur_4539 PE=4 SV=1
MM1 pKa = 7.02KK2 pKa = 9.23QTRR5 pKa = 11.84RR6 pKa = 11.84TYY8 pKa = 11.14LKK10 pKa = 9.28GTAASALIGIGALSGLSGSAAAEE33 pKa = 4.31SNFDD37 pKa = 4.07LEE39 pKa = 5.47AGFADD44 pKa = 4.89TSWLDD49 pKa = 3.49DD50 pKa = 4.28DD51 pKa = 5.63VDD53 pKa = 3.71VHH55 pKa = 6.73TITEE59 pKa = 4.21PTRR62 pKa = 11.84SAVEE66 pKa = 4.16SAFSASGARR75 pKa = 11.84VVVFEE80 pKa = 4.2TSGTIDD86 pKa = 4.12LGGNDD91 pKa = 3.76LAITEE96 pKa = 4.56DD97 pKa = 4.19YY98 pKa = 10.75CWVAGQTAPSPGITFINGQVRR119 pKa = 11.84ISANNCVVQHH129 pKa = 5.23IRR131 pKa = 11.84SRR133 pKa = 11.84IGPGSDD139 pKa = 4.29GSIQSNDD146 pKa = 3.3AFNTADD152 pKa = 3.41GTQNNVVDD160 pKa = 4.58HH161 pKa = 6.64VSASWGTDD169 pKa = 2.56EE170 pKa = 4.91CLSVGYY176 pKa = 8.02DD177 pKa = 3.52TQDD180 pKa = 3.14TTVTNCLIYY189 pKa = 10.56EE190 pKa = 4.46GLYY193 pKa = 10.7DD194 pKa = 4.06PYY196 pKa = 11.51GNEE199 pKa = 3.63ADD201 pKa = 3.99HH202 pKa = 7.08NYY204 pKa = 10.53GSLIGDD210 pKa = 4.09GASNVTLAGNVWGKK224 pKa = 10.05VRR226 pKa = 11.84GRR228 pKa = 11.84APRR231 pKa = 11.84LKK233 pKa = 10.37SDD235 pKa = 3.51TEE237 pKa = 4.35TVVVNNLLYY246 pKa = 10.88FFDD249 pKa = 4.26EE250 pKa = 4.56SANADD255 pKa = 3.66DD256 pKa = 4.24SAVTSFVGNAAICADD271 pKa = 4.48DD272 pKa = 5.56DD273 pKa = 4.28DD274 pKa = 7.06AILEE278 pKa = 4.33GSPTAYY284 pKa = 10.31HH285 pKa = 7.33ADD287 pKa = 3.71NIAYY291 pKa = 7.97DD292 pKa = 3.84PPMVDD297 pKa = 3.52EE298 pKa = 4.56QPIAEE303 pKa = 4.56PEE305 pKa = 4.5STSSPPLWPSGLSEE319 pKa = 4.29MPSGDD324 pKa = 3.73VEE326 pKa = 4.73SHH328 pKa = 6.05NLTNAGARR336 pKa = 11.84PADD339 pKa = 3.83RR340 pKa = 11.84TQNDD344 pKa = 2.79ARR346 pKa = 11.84IVQEE350 pKa = 3.64IADD353 pKa = 4.53RR354 pKa = 11.84AGLDD358 pKa = 3.96YY359 pKa = 11.19LDD361 pKa = 4.52SPYY364 pKa = 10.89DD365 pKa = 3.56YY366 pKa = 10.53WVGHH370 pKa = 6.24HH371 pKa = 7.35DD372 pKa = 3.85EE373 pKa = 4.38VGGYY377 pKa = 9.56PEE379 pKa = 5.64LPVNTHH385 pKa = 5.34SLEE388 pKa = 4.26VPDD391 pKa = 4.57SGIRR395 pKa = 11.84DD396 pKa = 3.82WLAGWAQAVEE406 pKa = 4.72EE407 pKa = 5.08GSSPPDD413 pKa = 3.63GGSGDD418 pKa = 4.62DD419 pKa = 4.28GSSGPIPTGTYY430 pKa = 9.85EE431 pKa = 3.87IANVNSGQLLEE442 pKa = 4.4VADD445 pKa = 4.56ASTADD450 pKa = 3.76GANVQQWSATDD461 pKa = 3.35HH462 pKa = 6.7ATQQWYY468 pKa = 10.41VEE470 pKa = 4.03DD471 pKa = 3.96TGNGEE476 pKa = 4.36YY477 pKa = 10.78VLQNANSGLLLEE489 pKa = 4.74VADD492 pKa = 5.31GSTEE496 pKa = 4.05DD497 pKa = 3.65GANVQQHH504 pKa = 6.9ADD506 pKa = 3.74TGCDD510 pKa = 3.4CQRR513 pKa = 11.84WSINDD518 pKa = 3.42VGNGEE523 pKa = 4.51YY524 pKa = 10.02ILEE527 pKa = 4.38AVHH530 pKa = 6.19SGKK533 pKa = 10.32VADD536 pKa = 4.19VEE538 pKa = 4.62GASTSDD544 pKa = 3.37GANVLQWPDD553 pKa = 2.89TGGANQRR560 pKa = 11.84WTFDD564 pKa = 3.43SVV566 pKa = 2.95

Molecular weight: 59.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D2RR95|D2RR95_HALTV Uncharacterized protein OS=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / JCM 9101 / NCIMB 13204 / VKM B-1734 / 4k) OX=543526 GN=Htur_3629 PE=4 SV=1
MM1 pKa = 7.94ALRR4 pKa = 11.84KK5 pKa = 9.81LLGSKK10 pKa = 8.54ATRR13 pKa = 11.84SLTVVSVLSDD23 pKa = 3.23AKK25 pKa = 10.62RR26 pKa = 11.84AFNRR30 pKa = 11.84GNRR33 pKa = 11.84TRR35 pKa = 11.84GLLLVGVAVLAWKK48 pKa = 7.96WTVLGMAAQGIVKK61 pKa = 10.0LLRR64 pKa = 11.84RR65 pKa = 11.84GGSAASSPAA74 pKa = 3.1

Molecular weight: 7.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5113

0

5113

1473976

30

1969

288.3

31.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.565 ± 0.052

0.77 ± 0.012

8.632 ± 0.042

9.243 ± 0.052

3.231 ± 0.022

8.321 ± 0.037

1.984 ± 0.016

4.374 ± 0.027

1.713 ± 0.019

8.837 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.753 ± 0.015

2.384 ± 0.019

4.654 ± 0.025

2.428 ± 0.021

6.566 ± 0.039

5.616 ± 0.026

6.465 ± 0.025

8.558 ± 0.039

1.167 ± 0.015

2.739 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski