Jatrophihabitans sp. GAS493

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Jatrophihabitantales; Jatrophihabitantaceae; Jatrophihabitans; unclassified Jatrophihabitans

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4295 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A286ERM6|A0A286ERM6_9ACTN D-alanine--D-alanine ligase OS=Jatrophihabitans sp. GAS493 OX=1907575 GN=ddl PE=3 SV=1
MM1 pKa = 7.37HH2 pKa = 7.36APVATVNGTAIDD14 pKa = 4.06LTWTSGNDD22 pKa = 3.13NGGANGSVVTGYY34 pKa = 8.2TVQFASGDD42 pKa = 3.53NGTACTTNGAAMGCTVTGLATDD64 pKa = 3.51TDD66 pKa = 4.12YY67 pKa = 11.46TFTVTATNAKK77 pKa = 7.91GTSPLSPVSNVARR90 pKa = 11.84IGSTGTGGGGGTCTSTSADD109 pKa = 3.15GCGSVIVDD117 pKa = 3.43GSISISLDD125 pKa = 3.25NADD128 pKa = 4.05SSFALGGQSGTDD140 pKa = 2.86SSTPDD145 pKa = 3.02NTISYY150 pKa = 10.54VVTTNNAAGYY160 pKa = 8.42SVSVKK165 pKa = 10.25SDD167 pKa = 3.35QPTLTPDD174 pKa = 2.99SAKK177 pKa = 10.86NSDD180 pKa = 4.62KK181 pKa = 10.97ISFDD185 pKa = 4.25AITATGTAFVSGTIPNDD202 pKa = 3.51GTSDD206 pKa = 3.45GGSAQLATGGTVYY219 pKa = 9.8TQTARR224 pKa = 11.84SKK226 pKa = 10.35ATGDD230 pKa = 3.22THH232 pKa = 5.35TTTFGVNIPFVAADD246 pKa = 4.34AYY248 pKa = 10.66RR249 pKa = 11.84GTVTFTASANN259 pKa = 3.55

Molecular weight: 25.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A286EIE1|A0A286EIE1_9ACTN EmrB/QacA subfamily drug resistance transporter OS=Jatrophihabitans sp. GAS493 OX=1907575 GN=SAMN05892883_0343 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.55LLKK22 pKa = 8.44KK23 pKa = 9.17TRR25 pKa = 11.84IQRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.73KK32 pKa = 9.84

Molecular weight: 4.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4295

0

4295

1461866

29

11849

340.4

36.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.219 ± 0.06

0.741 ± 0.013

5.795 ± 0.04

5.044 ± 0.055

2.917 ± 0.024

8.851 ± 0.046

2.033 ± 0.026

4.339 ± 0.024

2.069 ± 0.027

10.142 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.72 ± 0.019

2.32 ± 0.034

5.635 ± 0.042

3.178 ± 0.023

6.948 ± 0.068

6.476 ± 0.051

6.524 ± 0.079

8.61 ± 0.034

1.394 ± 0.02

2.046 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski