Gordonia phage Kita

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; Nymphadoravirus; Gordonia virus Kita

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 80 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142KB66|A0A142KB66_9CAUD Uncharacterized protein OS=Gordonia phage Kita OX=1821556 GN=36 PE=4 SV=1
MM1 pKa = 7.53LLDD4 pKa = 3.47ILAIIVCLVAACWLIATAPDD24 pKa = 4.28LYY26 pKa = 11.37

Molecular weight: 2.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A142KB40|A0A142KB40_9CAUD Uncharacterized protein OS=Gordonia phage Kita OX=1821556 GN=10 PE=4 SV=1
MM1 pKa = 7.91RR2 pKa = 11.84APLTRR7 pKa = 11.84SRR9 pKa = 11.84LSMADD14 pKa = 3.17LLARR18 pKa = 11.84FFTQPFTVRR27 pKa = 11.84RR28 pKa = 11.84KK29 pKa = 8.31TGDD32 pKa = 3.38GAVGPIYY39 pKa = 10.43ADD41 pKa = 3.25PVTLQGRR48 pKa = 11.84VNATNRR54 pKa = 11.84LIIDD58 pKa = 3.51DD59 pKa = 4.68RR60 pKa = 11.84GNQVLSAAKK69 pKa = 9.23ISMSITEE76 pKa = 4.27HH77 pKa = 7.32DD78 pKa = 4.29IPTGSQVRR86 pKa = 11.84VGDD89 pKa = 4.15GPWRR93 pKa = 11.84TVIATSRR100 pKa = 11.84HH101 pKa = 5.06RR102 pKa = 11.84GGFRR106 pKa = 11.84KK107 pKa = 10.33SPDD110 pKa = 3.47YY111 pKa = 11.31YY112 pKa = 11.38SIDD115 pKa = 3.74LNN117 pKa = 3.96

Molecular weight: 12.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

80

0

80

16558

26

2145

207.0

22.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.97 ± 0.682

0.755 ± 0.169

7.096 ± 0.397

5.52 ± 0.28

2.579 ± 0.173

8.346 ± 0.371

1.975 ± 0.23

4.499 ± 0.181

3.34 ± 0.215

7.537 ± 0.239

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.102 ± 0.194

3.11 ± 0.201

5.695 ± 0.259

3.744 ± 0.286

7.561 ± 0.432

5.411 ± 0.215

7.416 ± 0.288

7.29 ± 0.236

1.86 ± 0.15

2.192 ± 0.143
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski