Acinetobacter phage YMC11/11/R3177

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vieuvirus; Acinetobacter virus R3177

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 80 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D4DBL3|A0A0D4DBL3_9CAUD Uncharacterized protein OS=Acinetobacter phage YMC11/11/R3177 OX=1628721 GN=ABA3177_00530 PE=4 SV=1
MM1 pKa = 7.66INNNYY6 pKa = 8.27VPQWHH11 pKa = 5.9EE12 pKa = 4.04TPFQHH17 pKa = 6.94IKK19 pKa = 8.45YY20 pKa = 8.13TLVRR24 pKa = 11.84NQDD27 pKa = 3.26QLDD30 pKa = 3.49ILFDD34 pKa = 3.98SVKK37 pKa = 10.6APYY40 pKa = 10.19EE41 pKa = 3.91FLEE44 pKa = 4.85GGADD48 pKa = 3.37ARR50 pKa = 11.84VNFQDD55 pKa = 4.03GYY57 pKa = 11.48AVVQIGDD64 pKa = 3.81CSNWDD69 pKa = 4.3LIQVHH74 pKa = 6.34GLLLHH79 pKa = 6.08EE80 pKa = 5.42AVHH83 pKa = 6.15IWQEE87 pKa = 3.84VALVMGEE94 pKa = 4.21EE95 pKa = 4.12NPSIEE100 pKa = 4.05FEE102 pKa = 4.33AYY104 pKa = 10.11SIQAIAQDD112 pKa = 3.9LFEE115 pKa = 4.67MFEE118 pKa = 4.23ASTTRR123 pKa = 3.26

Molecular weight: 14.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D4DBJ3|A0A0D4DBJ3_9CAUD Uncharacterized protein OS=Acinetobacter phage YMC11/11/R3177 OX=1628721 GN=ABA3177_00330 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84YY3 pKa = 9.52AVRR6 pKa = 11.84RR7 pKa = 11.84KK8 pKa = 9.59QDD10 pKa = 2.92ISVSTTPLEE19 pKa = 4.04VVIPLEE25 pKa = 4.17QPVKK29 pKa = 10.13IYY31 pKa = 10.01SAKK34 pKa = 9.98EE35 pKa = 3.5LAAMPLSVMNAAIEE49 pKa = 4.11AQEE52 pKa = 4.02RR53 pKa = 11.84FYY55 pKa = 11.0QLEE58 pKa = 4.44EE59 pKa = 4.04LTHH62 pKa = 6.12MGGQAIAVRR71 pKa = 11.84RR72 pKa = 11.84LMEE75 pKa = 5.45DD76 pKa = 3.03GHH78 pKa = 8.51KK79 pKa = 10.47LIQVKK84 pKa = 9.57EE85 pKa = 4.19KK86 pKa = 10.82SRR88 pKa = 11.84IRR90 pKa = 11.84YY91 pKa = 8.65KK92 pKa = 10.57INNEE96 pKa = 4.49FIPPRR101 pKa = 11.84IIRR104 pKa = 11.84QLEE107 pKa = 3.67MRR109 pKa = 11.84GLVKK113 pKa = 10.76LGRR116 pKa = 11.84GKK118 pKa = 10.62

Molecular weight: 13.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

80

0

80

14276

37

1436

178.4

20.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.441 ± 0.512

1.03 ± 0.131

5.905 ± 0.167

7.404 ± 0.338

3.762 ± 0.19

6.542 ± 0.29

1.898 ± 0.189

5.933 ± 0.211

7.754 ± 0.417

8.413 ± 0.209

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.466 ± 0.16

5.043 ± 0.237

3.502 ± 0.278

4.651 ± 0.309

4.609 ± 0.177

5.954 ± 0.256

5.366 ± 0.325

6.367 ± 0.267

1.254 ± 0.126

3.706 ± 0.208
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski