Podoviridae sp. ctdb7

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 54 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345BQV7|A0A345BQV7_9CAUD Putative transcriptional regulator XRE family OS=Podoviridae sp. ctdb7 OX=2675443 PE=4 SV=1
MM1 pKa = 7.66RR2 pKa = 11.84EE3 pKa = 4.14EE4 pKa = 4.08KK5 pKa = 10.73VVMYY9 pKa = 7.41EE10 pKa = 4.04SPEE13 pKa = 3.84AASIQTVTGWVDD25 pKa = 2.75PSGRR29 pKa = 11.84FWGKK33 pKa = 9.7DD34 pKa = 2.89EE35 pKa = 5.23HH36 pKa = 5.75MARR39 pKa = 11.84YY40 pKa = 9.42CGSTHH45 pKa = 6.08RR46 pKa = 11.84QCAKK50 pKa = 10.74NPDD53 pKa = 3.99HH54 pKa = 6.89PTHH57 pKa = 5.96EE58 pKa = 4.34TRR60 pKa = 11.84GWCRR64 pKa = 11.84ACQAEE69 pKa = 4.13GDD71 pKa = 3.99AAKK74 pKa = 9.9FAAMPRR80 pKa = 11.84RR81 pKa = 11.84LWGGEE86 pKa = 4.2PITHH90 pKa = 6.71YY91 pKa = 11.27DD92 pKa = 3.11GDD94 pKa = 3.64RR95 pKa = 11.84YY96 pKa = 10.64FFDD99 pKa = 4.8EE100 pKa = 4.89EE101 pKa = 4.96SLLDD105 pKa = 3.93WIVDD109 pKa = 3.78YY110 pKa = 11.22EE111 pKa = 4.81IDD113 pKa = 4.28LADD116 pKa = 4.44LKK118 pKa = 11.39LVFCTPNYY126 pKa = 9.41PSQIDD131 pKa = 3.91PSDD134 pKa = 3.88HH135 pKa = 6.93FSDD138 pKa = 5.22DD139 pKa = 3.66LPEE142 pKa = 6.28DD143 pKa = 4.1GEE145 pKa = 4.45INDD148 pKa = 4.6DD149 pKa = 3.5QLLAAFEE156 pKa = 4.93LLNEE160 pKa = 4.98MISKK164 pKa = 10.26SPPLSWSPGKK174 pKa = 10.2EE175 pKa = 3.81AVDD178 pKa = 4.4LPQSFIDD185 pKa = 3.72MVKK188 pKa = 10.35HH189 pKa = 5.24EE190 pKa = 5.11RR191 pKa = 11.84EE192 pKa = 3.99DD193 pKa = 3.46AAA195 pKa = 5.66

Molecular weight: 22.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345BQT9|A0A345BQT9_9CAUD Uncharacterized protein OS=Podoviridae sp. ctdb7 OX=2675443 PE=4 SV=1
MM1 pKa = 7.13TRR3 pKa = 11.84IEE5 pKa = 4.52KK6 pKa = 10.32KK7 pKa = 9.3LTMVVSALASSIAVAPGSSIVSMAASMAFTAIWCGVIAPYY47 pKa = 9.78PRR49 pKa = 11.84PGRR52 pKa = 11.84SARR55 pKa = 11.84PVPAGEE61 pKa = 4.09AACGQLLVALRR72 pKa = 11.84LDD74 pKa = 4.3RR75 pKa = 11.84YY76 pKa = 9.14WRR78 pKa = 11.84WLHH81 pKa = 5.75LLRR84 pKa = 11.84RR85 pKa = 11.84RR86 pKa = 11.84PRR88 pKa = 11.84TSLCVWQPEE97 pKa = 4.24PGAQEE102 pKa = 3.95PRR104 pKa = 11.84DD105 pKa = 3.66

Molecular weight: 11.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

54

0

54

12606

81

856

233.4

25.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.772 ± 0.54

1.158 ± 0.166

5.957 ± 0.205

6.275 ± 0.413

3.022 ± 0.196

8.028 ± 0.378

1.896 ± 0.203

4.419 ± 0.221

4.117 ± 0.257

8.448 ± 0.299

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.61 ± 0.153

3.538 ± 0.303

4.474 ± 0.211

5.037 ± 0.404

7.338 ± 0.365

5.902 ± 0.277

5.648 ± 0.303

6.005 ± 0.257

1.602 ± 0.154

2.753 ± 0.221
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski