Cesiribacter andamanensis AMV16

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cesiribacteraceae; Cesiribacter; Cesiribacter andamanensis

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4225 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M7NGB0|M7NGB0_9BACT Uncharacterized protein OS=Cesiribacter andamanensis AMV16 OX=1279009 GN=ADICEAN_04017 PE=4 SV=1
MM1 pKa = 7.34NSIIRR6 pKa = 11.84KK7 pKa = 9.25SFLFVCLSFGILACKK22 pKa = 10.46DD23 pKa = 3.19DD24 pKa = 4.89DD25 pKa = 4.88APANTPPVFAITSPTDD41 pKa = 3.36AQIEE45 pKa = 4.16AGFVVGQTVQIAGTVTDD62 pKa = 3.66NSEE65 pKa = 3.81VEE67 pKa = 4.48TIVTSIYY74 pKa = 10.99YY75 pKa = 10.42NGFDD79 pKa = 3.41TGQGEE84 pKa = 4.73TIQVGQASYY93 pKa = 10.96SIDD96 pKa = 3.41YY97 pKa = 10.51SVQIPSNAPAGTYY110 pKa = 10.03RR111 pKa = 11.84IVLLATDD118 pKa = 4.85DD119 pKa = 4.15EE120 pKa = 5.03GLTASWDD127 pKa = 3.21KK128 pKa = 10.72TFQVRR133 pKa = 11.84NQQ135 pKa = 3.06

Molecular weight: 14.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M7NYD6|M7NYD6_9BACT DNA binding domain excisionase family OS=Cesiribacter andamanensis AMV16 OX=1279009 GN=ADICEAN_01416 PE=4 SV=1
MM1 pKa = 7.36GLWALVGRR9 pKa = 11.84VALPQGAGNGLYY21 pKa = 9.87IVMSLCRR28 pKa = 11.84AINAVALVQAGIEE41 pKa = 3.89PLRR44 pKa = 11.84RR45 pKa = 11.84VGSGVLAQQHH55 pKa = 4.6VHH57 pKa = 4.94QLVIKK62 pKa = 9.67RR63 pKa = 11.84LGIIRR68 pKa = 11.84TGKK71 pKa = 10.05VSPALAPAAPAMGQAVHH88 pKa = 6.83HH89 pKa = 6.11LPGRR93 pKa = 11.84AFAAQAAIGLGYY105 pKa = 9.79PCFSKK110 pKa = 10.6IFLGQNIGSNLRR122 pKa = 11.84PGLGHH127 pKa = 8.0LYY129 pKa = 9.64PLHH132 pKa = 6.36VKK134 pKa = 10.46NGVAGRR140 pKa = 11.84VADD143 pKa = 3.99GRR145 pKa = 11.84AAAGKK150 pKa = 10.78GEE152 pKa = 4.07MAVGIGLVFSEE163 pKa = 4.79IAANAQAFWLGDD175 pKa = 3.14FGFFHH180 pKa = 7.25KK181 pKa = 10.68NSCGG185 pKa = 3.4

Molecular weight: 19.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4225

0

4225

1361372

29

3427

322.2

36.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.708 ± 0.043

0.76 ± 0.013

4.718 ± 0.029

6.36 ± 0.046

4.305 ± 0.026

7.451 ± 0.04

2.139 ± 0.022

5.511 ± 0.034

4.731 ± 0.04

11.34 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.018

3.842 ± 0.033

4.616 ± 0.026

5.106 ± 0.033

5.54 ± 0.034

6.079 ± 0.038

5.183 ± 0.04

6.178 ± 0.028

1.332 ± 0.015

3.846 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski