Amino acid dipepetide frequency for Trinickia caryophylli (Paraburkholderia caryophylli)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	19.869AlaAla: 19.869 ± 0.162	1.468AlaCys: 1.468 ± 0.029	6.676AlaAsp: 6.676 ± 0.06	6.427AlaGlu: 6.427 ± 0.066	4.513AlaPhe: 4.513 ± 0.048	11.393AlaGly: 11.393 ± 0.109	3.069AlaHis: 3.069 ± 0.043	5.747AlaIle: 5.747 ± 0.056	3.588AlaLys: 3.588 ± 0.058	15.508AlaLeu: 15.508 ± 0.111	3.309AlaMet: 3.309 ± 0.043	3.113AlaAsn: 3.113 ± 0.054	6.581AlaPro: 6.581 ± 0.079	5.493AlaGln: 5.493 ± 0.074	10.815AlaArg: 10.815 ± 0.092	7.92AlaSer: 7.92 ± 0.08	6.343AlaThr: 6.343 ± 0.068	9.237AlaVal: 9.237 ± 0.07	1.796AlaTrp: 1.796 ± 0.036	2.839AlaTyr: 2.839 ± 0.038	0.0AlaXaa: 0.0 ± 0.0
Cys	1.36CysAla: 1.36 ± 0.027	0.123CysCys: 0.123 ± 0.009	0.557CysAsp: 0.557 ± 0.018	0.529CysGlu: 0.529 ± 0.019	0.338CysPhe: 0.338 ± 0.015	1.013CysGly: 1.013 ± 0.024	0.255CysHis: 0.255 ± 0.013	0.389CysIle: 0.389 ± 0.013	0.212CysLys: 0.212 ± 0.01	0.832CysLeu: 0.832 ± 0.026	0.204CysMet: 0.204 ± 0.011	0.219CysAsn: 0.219 ± 0.01	0.475CysPro: 0.475 ± 0.018	0.206CysGln: 0.206 ± 0.011	0.7CysArg: 0.7 ± 0.024	0.516CysSer: 0.516 ± 0.017	0.498CysThr: 0.498 ± 0.016	0.777CysVal: 0.777 ± 0.021	0.109CysTrp: 0.109 ± 0.007	0.238CysTyr: 0.238 ± 0.012	0.0CysXaa: 0.0 ± 0.0
Asp	8.198AspAla: 8.198 ± 0.08	0.452AspCys: 0.452 ± 0.015	3.096AspAsp: 3.096 ± 0.05	3.639AspGlu: 3.639 ± 0.046	1.847AspPhe: 1.847 ± 0.03	4.672AspGly: 4.672 ± 0.064	1.065AspHis: 1.065 ± 0.022	2.472AspIle: 2.472 ± 0.037	1.461AspLys: 1.461 ± 0.031	4.934AspLeu: 4.934 ± 0.054	1.096AspMet: 1.096 ± 0.024	1.209AspAsn: 1.209 ± 0.032	2.892AspPro: 2.892 ± 0.04	1.353AspGln: 1.353 ± 0.026	3.425AspArg: 3.425 ± 0.037	2.306AspSer: 2.306 ± 0.041	2.776AspThr: 2.776 ± 0.04	4.302AspVal: 4.302 ± 0.05	0.88AspTrp: 0.88 ± 0.022	1.474AspTyr: 1.474 ± 0.026	0.0AspXaa: 0.0 ± 0.0
Glu	7.243GluAla: 7.243 ± 0.075	0.429GluCys: 0.429 ± 0.015	2.059GluAsp: 2.059 ± 0.036	2.422GluGlu: 2.422 ± 0.037	1.703GluPhe: 1.703 ± 0.029	3.502GluGly: 3.502 ± 0.044	1.52GluHis: 1.52 ± 0.03	2.751GluIle: 2.751 ± 0.042	1.669GluLys: 1.669 ± 0.034	5.42GluLeu: 5.42 ± 0.06	1.158GluMet: 1.158 ± 0.026	1.285GluAsn: 1.285 ± 0.028	2.887GluPro: 2.887 ± 0.038	2.398GluGln: 2.398 ± 0.039	5.597GluArg: 5.597 ± 0.066	2.69GluSer: 2.69 ± 0.035	2.885GluThr: 2.885 ± 0.04	3.477GluVal: 3.477 ± 0.047	0.722GluTrp: 0.722 ± 0.02	1.191GluTyr: 1.191 ± 0.029	0.0GluXaa: 0.0 ± 0.0
Phe	4.883PheAla: 4.883 ± 0.059	0.407PheCys: 0.407 ± 0.015	2.695PheAsp: 2.695 ± 0.039	2.09PheGlu: 2.09 ± 0.039	1.393PhePhe: 1.393 ± 0.031	3.56PheGly: 3.56 ± 0.051	0.742PheHis: 0.742 ± 0.02	1.417PheIle: 1.417 ± 0.031	0.972PheLys: 0.972 ± 0.021	2.803PheLeu: 2.803 ± 0.049	0.761PheMet: 0.761 ± 0.022	1.013PheAsn: 1.013 ± 0.026	1.473PhePro: 1.473 ± 0.027	0.88PheGln: 0.88 ± 0.024	2.009PheArg: 2.009 ± 0.029	2.309PheSer: 2.309 ± 0.033	1.826PheThr: 1.826 ± 0.029	3.238PheVal: 3.238 ± 0.048	0.489PheTrp: 0.489 ± 0.016	0.876PheTyr: 0.876 ± 0.022	0.0PheXaa: 0.0 ± 0.0
Gly	10.239GlyAla: 10.239 ± 0.107	0.893GlyCys: 0.893 ± 0.023	3.994GlyAsp: 3.994 ± 0.051	4.585GlyGlu: 4.585 ± 0.051	3.261GlyPhe: 3.261 ± 0.046	7.057GlyGly: 7.057 ± 0.101	1.975GlyHis: 1.975 ± 0.035	4.193GlyIle: 4.193 ± 0.043	2.98GlyLys: 2.98 ± 0.041	7.784GlyLeu: 7.784 ± 0.068	2.153GlyMet: 2.153 ± 0.036	2.384GlyAsn: 2.384 ± 0.063	3.05GlyPro: 3.05 ± 0.041	2.692GlyGln: 2.692 ± 0.046	5.793GlyArg: 5.793 ± 0.059	4.601GlySer: 4.601 ± 0.074	4.922GlyThr: 4.922 ± 0.068	6.455GlyVal: 6.455 ± 0.068	1.341GlyTrp: 1.341 ± 0.025	2.406GlyTyr: 2.406 ± 0.034	0.0GlyXaa: 0.0 ± 0.0
His	3.237HisAla: 3.237 ± 0.044	0.271HisCys: 0.271 ± 0.013	1.361HisAsp: 1.361 ± 0.029	1.272HisGlu: 1.272 ± 0.027	0.92HisPhe: 0.92 ± 0.023	2.195HisGly: 2.195 ± 0.036	0.585HisHis: 0.585 ± 0.018	0.897HisIle: 0.897 ± 0.018	0.459HisLys: 0.459 ± 0.017	2.125HisLeu: 2.125 ± 0.034	0.522HisMet: 0.522 ± 0.015	0.504HisAsn: 0.504 ± 0.016	1.482HisPro: 1.482 ± 0.03	0.588HisGln: 0.588 ± 0.018	1.744HisArg: 1.744 ± 0.032	1.031HisSer: 1.031 ± 0.023	1.05HisThr: 1.05 ± 0.024	1.746HisVal: 1.746 ± 0.028	0.391HisTrp: 0.391 ± 0.015	0.677HisTyr: 0.677 ± 0.018	0.0HisXaa: 0.0 ± 0.0
Ile	7.004IleAla: 7.004 ± 0.071	0.429IleCys: 0.429 ± 0.014	3.545IleAsp: 3.545 ± 0.047	3.477IleGlu: 3.477 ± 0.042	1.311IlePhe: 1.311 ± 0.029	4.677IleGly: 4.677 ± 0.054	0.853IleHis: 0.853 ± 0.022	1.33IleIle: 1.33 ± 0.034	1.203IleLys: 1.203 ± 0.026	3.007IleLeu: 3.007 ± 0.041	0.709IleMet: 0.709 ± 0.02	1.184IleAsn: 1.184 ± 0.028	1.916IlePro: 1.916 ± 0.033	1.042IleGln: 1.042 ± 0.024	2.711IleArg: 2.711 ± 0.038	2.328IleSer: 2.328 ± 0.04	1.982IleThr: 1.982 ± 0.04	4.594IleVal: 4.594 ± 0.057	0.491IleTrp: 0.491 ± 0.016	0.958IleTyr: 0.958 ± 0.021	0.0IleXaa: 0.0 ± 0.0
Lys	3.449LysAla: 3.449 ± 0.046	0.16LysCys: 0.16 ± 0.009	1.326LysAsp: 1.326 ± 0.03	1.297LysGlu: 1.297 ± 0.032	0.806LysPhe: 0.806 ± 0.019	1.982LysGly: 1.982 ± 0.038	0.631LysHis: 0.631 ± 0.016	1.427LysIle: 1.427 ± 0.034	1.046LysLys: 1.046 ± 0.033	3.092LysLeu: 3.092 ± 0.046	0.69LysMet: 0.69 ± 0.019	0.744LysAsn: 0.744 ± 0.021	1.814LysPro: 1.814 ± 0.035	1.087LysGln: 1.087 ± 0.024	2.294LysArg: 2.294 ± 0.035	1.543LysSer: 1.543 ± 0.029	1.774LysThr: 1.774 ± 0.032	1.984LysVal: 1.984 ± 0.036	0.352LysTrp: 0.352 ± 0.014	0.648LysTyr: 0.648 ± 0.019	0.0LysXaa: 0.0 ± 0.0
Leu	15.377LeuAla: 15.377 ± 0.117	0.983LeuCys: 0.983 ± 0.027	6.03LeuAsp: 6.03 ± 0.049	5.185LeuGlu: 5.185 ± 0.062	3.471LeuPhe: 3.471 ± 0.05	8.153LeuGly: 8.153 ± 0.081	2.216LeuHis: 2.216 ± 0.037	4.168LeuIle: 4.168 ± 0.056	2.92LeuLys: 2.92 ± 0.046	9.662LeuLeu: 9.662 ± 0.099	2.142LeuMet: 2.142 ± 0.037	2.411LeuAsn: 2.411 ± 0.042	5.781LeuPro: 5.781 ± 0.062	3.0LeuGln: 3.0 ± 0.037	7.357LeuArg: 7.357 ± 0.072	6.198LeuSer: 6.198 ± 0.067	5.317LeuThr: 5.317 ± 0.064	7.789LeuVal: 7.789 ± 0.075	1.093LeuTrp: 1.093 ± 0.025	2.141LeuTyr: 2.141 ± 0.038	0.0LeuXaa: 0.0 ± 0.0
Met	2.614MetAla: 2.614 ± 0.038	0.16MetCys: 0.16 ± 0.01	0.88MetAsp: 0.88 ± 0.024	0.847MetGlu: 0.847 ± 0.021	0.704MetPhe: 0.704 ± 0.02	1.501MetGly: 1.501 ± 0.029	0.547MetHis: 0.547 ± 0.016	1.043MetIle: 1.043 ± 0.025	0.97MetLys: 0.97 ± 0.022	2.621MetLeu: 2.621 ± 0.038	0.559MetMet: 0.559 ± 0.021	0.848MetAsn: 0.848 ± 0.019	1.5MetPro: 1.5 ± 0.026	0.96MetGln: 0.96 ± 0.02	1.924MetArg: 1.924 ± 0.037	1.723MetSer: 1.723 ± 0.033	1.656MetThr: 1.656 ± 0.031	1.313MetVal: 1.313 ± 0.026	0.205MetTrp: 0.205 ± 0.011	0.379MetTyr: 0.379 ± 0.014	0.0MetXaa: 0.0 ± 0.0
Asn	3.519AsnAla: 3.519 ± 0.059	0.244AsnCys: 0.244 ± 0.013	1.419AsnAsp: 1.419 ± 0.029	1.31AsnGlu: 1.31 ± 0.024	0.868AsnPhe: 0.868 ± 0.022	2.453AsnGly: 2.453 ± 0.053	0.493AsnHis: 0.493 ± 0.018	1.094AsnIle: 1.094 ± 0.028	0.595AsnLys: 0.595 ± 0.02	2.486AsnLeu: 2.486 ± 0.042	0.513AsnMet: 0.513 ± 0.017	0.715AsnAsn: 0.715 ± 0.026	1.629AsnPro: 1.629 ± 0.032	0.781AsnGln: 0.781 ± 0.025	1.726AsnArg: 1.726 ± 0.031	1.176AsnSer: 1.176 ± 0.036	1.357AsnThr: 1.357 ± 0.034	2.184AsnVal: 2.184 ± 0.042	0.407AsnTrp: 0.407 ± 0.015	0.671AsnTyr: 0.671 ± 0.022	0.0AsnXaa: 0.0 ± 0.0
Pro	7.211ProAla: 7.211 ± 0.076	0.391ProCys: 0.391 ± 0.016	3.201ProAsp: 3.201 ± 0.042	3.052ProGlu: 3.052 ± 0.043	1.956ProPhe: 1.956 ± 0.035	4.505ProGly: 4.505 ± 0.061	1.271ProHis: 1.271 ± 0.03	2.128ProIle: 2.128 ± 0.034	1.307ProLys: 1.307 ± 0.026	5.262ProLeu: 5.262 ± 0.056	1.119ProMet: 1.119 ± 0.024	1.362ProAsn: 1.362 ± 0.029	2.734ProPro: 2.734 ± 0.047	1.795ProGln: 1.795 ± 0.036	3.315ProArg: 3.315 ± 0.046	2.997ProSer: 2.997 ± 0.044	2.497ProThr: 2.497 ± 0.034	4.124ProVal: 4.124 ± 0.049	0.67ProTrp: 0.67 ± 0.019	1.244ProTyr: 1.244 ± 0.027	0.0ProXaa: 0.0 ± 0.0
Gln	4.688GlnAla: 4.688 ± 0.057	0.286GlnCys: 0.286 ± 0.013	1.211GlnAsp: 1.211 ± 0.027	1.26GlnGlu: 1.26 ± 0.028	1.193GlnPhe: 1.193 ± 0.027	2.345GlnGly: 2.345 ± 0.038	0.802GlnHis: 0.802 ± 0.02	1.761GlnIle: 1.761 ± 0.032	0.918GlnLys: 0.918 ± 0.023	3.556GlnLeu: 3.556 ± 0.046	0.974GlnMet: 0.974 ± 0.023	0.791GlnAsn: 0.791 ± 0.02	2.01GlnPro: 2.01 ± 0.037	1.642GlnGln: 1.642 ± 0.036	2.849GlnArg: 2.849 ± 0.04	1.935GlnSer: 1.935 ± 0.034	1.936GlnThr: 1.936 ± 0.033	2.219GlnVal: 2.219 ± 0.036	0.585GlnTrp: 0.585 ± 0.019	0.879GlnTyr: 0.879 ± 0.024	0.0GlnXaa: 0.0 ± 0.0
Arg	9.49ArgAla: 9.49 ± 0.09	0.696ArgCys: 0.696 ± 0.022	3.863ArgAsp: 3.863 ± 0.047	4.687ArgGlu: 4.687 ± 0.058	3.182ArgPhe: 3.182 ± 0.042	5.069ArgGly: 5.069 ± 0.054	2.074ArgHis: 2.074 ± 0.038	3.869ArgIle: 3.869 ± 0.047	1.94ArgLys: 1.94 ± 0.037	7.912ArgLeu: 7.912 ± 0.082	1.975ArgMet: 1.975 ± 0.033	1.887ArgAsn: 1.887 ± 0.033	3.354ArgPro: 3.354 ± 0.049	2.595ArgGln: 2.595 ± 0.039	6.147ArgArg: 6.147 ± 0.076	3.639ArgSer: 3.639 ± 0.043	3.798ArgThr: 3.798 ± 0.045	5.411ArgVal: 5.411 ± 0.057	1.128ArgTrp: 1.128 ± 0.03	2.224ArgTyr: 2.224 ± 0.034	0.0ArgXaa: 0.0 ± 0.0
Ser	7.104SerAla: 7.104 ± 0.073	0.474SerCys: 0.474 ± 0.016	2.749SerAsp: 2.749 ± 0.04	2.649SerGlu: 2.649 ± 0.04	2.098SerPhe: 2.098 ± 0.032	5.487SerGly: 5.487 ± 0.076	1.226SerHis: 1.226 ± 0.031	2.678SerIle: 2.678 ± 0.04	1.467SerLys: 1.467 ± 0.032	5.783SerLeu: 5.783 ± 0.064	1.379SerMet: 1.379 ± 0.029	1.57SerAsn: 1.57 ± 0.04	2.983SerPro: 2.983 ± 0.044	1.761SerGln: 1.761 ± 0.034	3.853SerArg: 3.853 ± 0.048	3.378SerSer: 3.378 ± 0.054	3.04SerThr: 3.04 ± 0.052	4.25SerVal: 4.25 ± 0.046	0.661SerTrp: 0.661 ± 0.021	1.345SerTyr: 1.345 ± 0.023	0.0SerXaa: 0.0 ± 0.0
Thr	6.133ThrAla: 6.133 ± 0.071	0.419ThrCys: 0.419 ± 0.014	2.591ThrAsp: 2.591 ± 0.042	2.285ThrGlu: 2.285 ± 0.037	1.891ThrPhe: 1.891 ± 0.032	4.688ThrGly: 4.688 ± 0.067	1.231ThrHis: 1.231 ± 0.027	2.565ThrIle: 2.565 ± 0.042	1.23ThrLys: 1.23 ± 0.026	6.43ThrLeu: 6.43 ± 0.068	1.209ThrMet: 1.209 ± 0.025	1.358ThrAsn: 1.358 ± 0.04	3.364ThrPro: 3.364 ± 0.048	1.803ThrGln: 1.803 ± 0.034	3.611ThrArg: 3.611 ± 0.046	2.985ThrSer: 2.985 ± 0.053	2.8ThrThr: 2.8 ± 0.062	4.305ThrVal: 4.305 ± 0.058	0.624ThrTrp: 0.624 ± 0.019	1.21ThrTyr: 1.21 ± 0.03	0.0ThrXaa: 0.0 ± 0.0
Val	9.944ValAla: 9.944 ± 0.086	0.834ValCys: 0.834 ± 0.019	4.335ValAsp: 4.335 ± 0.049	4.186ValGlu: 4.186 ± 0.046	2.824ValPhe: 2.824 ± 0.041	5.489ValGly: 5.489 ± 0.069	1.582ValHis: 1.582 ± 0.03	3.373ValIle: 3.373 ± 0.047	2.274ValLys: 2.274 ± 0.043	7.804ValLeu: 7.804 ± 0.08	1.7ValMet: 1.7 ± 0.029	2.055ValAsn: 2.055 ± 0.035	4.27ValPro: 4.27 ± 0.05	2.301ValGln: 2.301 ± 0.036	5.57ValArg: 5.57 ± 0.061	4.646ValSer: 4.646 ± 0.058	4.397ValThr: 4.397 ± 0.051	6.312ValVal: 6.312 ± 0.071	0.924ValTrp: 0.924 ± 0.027	1.691ValTyr: 1.691 ± 0.029	0.0ValXaa: 0.0 ± 0.0
Trp	1.247TrpAla: 1.247 ± 0.031	0.148TrpCys: 0.148 ± 0.01	0.556TrpAsp: 0.556 ± 0.018	0.497TrpGlu: 0.497 ± 0.017	0.553TrpPhe: 0.553 ± 0.016	0.838TrpGly: 0.838 ± 0.02	0.419TrpHis: 0.419 ± 0.014	0.659TrpIle: 0.659 ± 0.02	0.381TrpLys: 0.381 ± 0.016	1.855TrpLeu: 1.855 ± 0.037	0.343TrpMet: 0.343 ± 0.014	0.406TrpAsn: 0.406 ± 0.015	0.703TrpPro: 0.703 ± 0.022	0.671TrpGln: 0.671 ± 0.019	1.316TrpArg: 1.316 ± 0.026	0.794TrpSer: 0.794 ± 0.022	0.657TrpThr: 0.657 ± 0.02	0.894TrpVal: 0.894 ± 0.024	0.225TrpTrp: 0.225 ± 0.01	0.314TrpTyr: 0.314 ± 0.014	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.896TyrAla: 2.896 ± 0.04	0.283TyrCys: 0.283 ± 0.015	1.402TyrAsp: 1.402 ± 0.031	1.313TyrGlu: 1.313 ± 0.03	1.002TyrPhe: 1.002 ± 0.024	2.181TyrGly: 2.181 ± 0.038	0.501TyrHis: 0.501 ± 0.018	0.792TyrIle: 0.792 ± 0.02	0.554TyrLys: 0.554 ± 0.017	2.521TyrLeu: 2.521 ± 0.035	0.437TyrMet: 0.437 ± 0.016	0.583TyrAsn: 0.583 ± 0.018	1.244TyrPro: 1.244 ± 0.025	0.79TyrGln: 0.79 ± 0.022	2.184TyrArg: 2.184 ± 0.034	1.221TyrSer: 1.221 ± 0.026	1.218TyrThr: 1.218 ± 0.025	1.9TyrVal: 1.9 ± 0.031	0.385TyrTrp: 0.385 ± 0.014	0.666TyrTyr: 0.666 ± 0.02	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 5785 proteins (1921830 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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