Grapevine virus F
Average proteome isoelectric point is 7.08
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|J7HCY1|J7HCY1_9VIRU Movement protein OS=Grapevine virus F OX=1221437 PE=4 SV=1
MM1 pKa = 7.43 SISVSSQRR9 pKa = 11.84 VAAASLYY16 pKa = 9.78 TNGDD20 pKa = 3.08 KK21 pKa = 10.86 TIIDD25 pKa = 3.76 QIKK28 pKa = 8.72 VIKK31 pKa = 9.85 SEE33 pKa = 3.97 RR34 pKa = 11.84 LKK36 pKa = 10.92 KK37 pKa = 10.28 IEE39 pKa = 4.04 VEE41 pKa = 3.76 VDD43 pKa = 3.25 GLFDD47 pKa = 4.02 YY48 pKa = 10.88 YY49 pKa = 11.49 VSDD52 pKa = 3.98 FMRR55 pKa = 11.84 DD56 pKa = 4.31 FISKK60 pKa = 10.36 LGIHH64 pKa = 6.25 TSVHH68 pKa = 5.79 SFVAHH73 pKa = 5.8 PHH75 pKa = 6.03 PVSKK79 pKa = 10.38 MFEE82 pKa = 3.78 NYY84 pKa = 9.49 ILYY87 pKa = 10.03 RR88 pKa = 11.84 CISSYY93 pKa = 10.57 IGNSNLFISCKK104 pKa = 6.6 EE105 pKa = 3.92 AKK107 pKa = 9.76 VKK109 pKa = 10.46 RR110 pKa = 11.84 FKK112 pKa = 10.75 FGRR115 pKa = 11.84 NGLEE119 pKa = 4.2 AKK121 pKa = 7.79 NTRR124 pKa = 11.84 YY125 pKa = 10.0 NRR127 pKa = 11.84 LIHH130 pKa = 6.58 SKK132 pKa = 10.8 DD133 pKa = 2.78 HH134 pKa = 7.05 FRR136 pKa = 11.84 YY137 pKa = 9.16 EE138 pKa = 3.27 WCTRR142 pKa = 11.84 NKK144 pKa = 10.04 NLEE147 pKa = 4.62 HH148 pKa = 7.15 IPEE151 pKa = 4.07 VRR153 pKa = 11.84 EE154 pKa = 4.14 GTKK157 pKa = 9.31 TCDD160 pKa = 2.75 TVVIHH165 pKa = 7.53 DD166 pKa = 4.03 EE167 pKa = 4.02 VQYY170 pKa = 10.93 WSLADD175 pKa = 3.69 LQNFLGNVEE184 pKa = 5.12 DD185 pKa = 4.05 NTNVLYY191 pKa = 10.9 SVVYY195 pKa = 8.99 PAEE198 pKa = 3.91 ITTGITFSLFPEE210 pKa = 4.61 AYY212 pKa = 9.13 EE213 pKa = 4.33 FEE215 pKa = 4.34 VHH217 pKa = 6.98 DD218 pKa = 6.22 GYY220 pKa = 11.15 FIWYY224 pKa = 8.36 PDD226 pKa = 3.17 GKK228 pKa = 11.03 AEE230 pKa = 4.23 GAYY233 pKa = 9.19 KK234 pKa = 10.38 QPINPWLLTTSKK246 pKa = 9.79 TEE248 pKa = 3.86 DD249 pKa = 3.02 VRR251 pKa = 11.84 YY252 pKa = 7.97 RR253 pKa = 11.84 TWTITKK259 pKa = 8.79 LQTVGAHH266 pKa = 6.35 HH267 pKa = 7.39 LFSCTPGSTITEE279 pKa = 3.89 DD280 pKa = 3.56 SYY282 pKa = 11.82 TYY284 pKa = 11.06 DD285 pKa = 2.97 QFTLINPYY293 pKa = 9.69 NCFAGRR299 pKa = 11.84 VHH301 pKa = 6.84 GRR303 pKa = 11.84 QTVRR307 pKa = 11.84 LRR309 pKa = 11.84 ARR311 pKa = 11.84 MVKK314 pKa = 9.97 PVLLYY319 pKa = 11.11 LMALRR324 pKa = 11.84 KK325 pKa = 9.02 PDD327 pKa = 3.91 CGSAVAKK334 pKa = 10.33 IRR336 pKa = 11.84 MLSHH340 pKa = 7.42 DD341 pKa = 4.17 EE342 pKa = 4.21 EE343 pKa = 4.92 SCEE346 pKa = 3.77 EE347 pKa = 4.36 AIFVAEE353 pKa = 4.02 LAKK356 pKa = 10.79 LISDD360 pKa = 4.34 LSLYY364 pKa = 11.11 NSMGAFNAWEE374 pKa = 3.8 AVKK377 pKa = 10.56 KK378 pKa = 10.01 VFHH381 pKa = 6.8 RR382 pKa = 11.84 AMGPWWTYY390 pKa = 9.88 LVNRR394 pKa = 11.84 RR395 pKa = 11.84 LFNEE399 pKa = 4.03 DD400 pKa = 3.09 SMHH403 pKa = 6.66 EE404 pKa = 4.43 FIANCDD410 pKa = 3.54 SAVITVPRR418 pKa = 11.84 IYY420 pKa = 10.09 RR421 pKa = 11.84 ACVEE425 pKa = 3.89 VRR427 pKa = 11.84 KK428 pKa = 7.93 TLRR431 pKa = 11.84 APLGHH436 pKa = 6.77 HH437 pKa = 4.37 WHH439 pKa = 6.88 EE440 pKa = 4.57 DD441 pKa = 3.51 EE442 pKa = 4.89 EE443 pKa = 5.26 VFGLLYY449 pKa = 10.69 LSEE452 pKa = 4.13 LAKK455 pKa = 10.56 GDD457 pKa = 3.63 RR458 pKa = 11.84 CSEE461 pKa = 4.35 VYY463 pKa = 10.56 SIPARR468 pKa = 11.84 EE469 pKa = 3.98 LQEE472 pKa = 3.97 ARR474 pKa = 11.84 VVAPITRR481 pKa = 11.84 ILRR484 pKa = 11.84 SHH486 pKa = 6.04 EE487 pKa = 3.94 LVRR490 pKa = 11.84 EE491 pKa = 3.92 QMLVQEE497 pKa = 4.61 VEE499 pKa = 4.2 LNTVHH504 pKa = 7.82 IAATPGNLIKK514 pKa = 10.16 MFRR517 pKa = 11.84 KK518 pKa = 9.66 CVIRR522 pKa = 11.84 LSAFRR527 pKa = 11.84 FMEE530 pKa = 4.12 TRR532 pKa = 11.84 LLTEE536 pKa = 4.07 YY537 pKa = 11.14 NSVEE541 pKa = 3.97 EE542 pKa = 4.24 SLTNGWMTDD551 pKa = 3.18 EE552 pKa = 4.31 RR553 pKa = 11.84 AMEE556 pKa = 3.9 ILFGVVEE563 pKa = 4.16 APILQEE569 pKa = 3.86 KK570 pKa = 9.37 VSEE573 pKa = 4.41 VEE575 pKa = 4.36 MPTADD580 pKa = 3.6 HH581 pKa = 6.23 TVGPATCSKK590 pKa = 9.53 ITDD593 pKa = 3.45 ATKK596 pKa = 10.84 GKK598 pKa = 10.76 VEE600 pKa = 4.1 VFLKK604 pKa = 9.51 QVKK607 pKa = 10.21 YY608 pKa = 10.67 LDD610 pKa = 3.63 KK611 pKa = 11.3 LKK613 pKa = 11.06 GRR615 pKa = 11.84 VCAFYY620 pKa = 11.0 SKK622 pKa = 10.95 YY623 pKa = 9.02 STGYY627 pKa = 7.74 TYY629 pKa = 10.72 TGGSHH634 pKa = 7.28 ISQGMPEE641 pKa = 4.33 SLVEE645 pKa = 4.06 LRR647 pKa = 11.84 RR648 pKa = 11.84 SMGLGEE654 pKa = 5.08 EE655 pKa = 4.34 YY656 pKa = 10.83 DD657 pKa = 3.36 HH658 pKa = 7.25 CLVQKK663 pKa = 9.38 YY664 pKa = 9.22 EE665 pKa = 4.23 KK666 pKa = 10.69 DD667 pKa = 3.34 GAIPFHH673 pKa = 7.32 ADD675 pKa = 3.77 DD676 pKa = 4.65 EE677 pKa = 4.73 KK678 pKa = 11.43 CYY680 pKa = 10.89 LPGSCVVTLNMHH692 pKa = 5.53 GTAEE696 pKa = 4.45 FMLKK700 pKa = 10.46 EE701 pKa = 3.92 NGKK704 pKa = 9.61 EE705 pKa = 3.81 EE706 pKa = 4.07 VHH708 pKa = 6.83 RR709 pKa = 11.84 VTLEE713 pKa = 4.36 DD714 pKa = 3.57 GDD716 pKa = 4.25 VLVMPEE722 pKa = 4.48 GVQEE726 pKa = 4.12 NYY728 pKa = 9.79 KK729 pKa = 10.69 HH730 pKa = 5.89 SVLVKK735 pKa = 9.5 SEE737 pKa = 3.71 GRR739 pKa = 11.84 ISLTFRR745 pKa = 11.84 NKK747 pKa = 9.33 TVDD750 pKa = 3.51 YY751 pKa = 9.02 MNSDD755 pKa = 3.21 AVSDD759 pKa = 4.16 YY760 pKa = 11.61 EE761 pKa = 4.37 EE762 pKa = 5.08 DD763 pKa = 4.41 APDD766 pKa = 3.41 VDD768 pKa = 5.15 DD769 pKa = 4.76 GLRR772 pKa = 11.84 SIQANRR778 pKa = 11.84 ANLCTLQCIADD789 pKa = 4.44 HH790 pKa = 6.82 IKK792 pKa = 10.78 LDD794 pKa = 4.08 LPILVARR801 pKa = 11.84 LNATNPEE808 pKa = 4.37 YY809 pKa = 10.28 ISEE812 pKa = 4.19 LSKK815 pKa = 11.22 GGPTLPTFINLCAKK829 pKa = 9.65 MDD831 pKa = 3.55 IPLQISGVHH840 pKa = 6.23 GGLQTRR846 pKa = 11.84 GNFKK850 pKa = 10.36 KK851 pKa = 10.53 LCVFMGEE858 pKa = 4.08 DD859 pKa = 2.89 HH860 pKa = 6.44 VEE862 pKa = 4.04 RR863 pKa = 11.84 VEE865 pKa = 4.17 EE866 pKa = 4.02 TVGRR870 pKa = 11.84 NNAYY874 pKa = 10.15 DD875 pKa = 3.83 AFSLHH880 pKa = 6.78 PNSGRR885 pKa = 11.84 GTFYY889 pKa = 10.67 PNRR892 pKa = 11.84 EE893 pKa = 4.03 YY894 pKa = 11.23 AEE896 pKa = 4.29 KK897 pKa = 10.4 LSEE900 pKa = 4.53 SMFEE904 pKa = 3.9 GHH906 pKa = 6.78 TGILLNKK913 pKa = 8.86 FKK915 pKa = 10.66 RR916 pKa = 11.84 GKK918 pKa = 10.35 SVIKK922 pKa = 10.28 DD923 pKa = 3.18 VRR925 pKa = 11.84 KK926 pKa = 9.69 EE927 pKa = 3.66 IKK929 pKa = 9.51 FVSFFGFAGSGKK941 pKa = 9.84 SYY943 pKa = 10.95 YY944 pKa = 9.29 PQTVLQHH951 pKa = 5.49 TFGIRR956 pKa = 11.84 ALVISPRR963 pKa = 11.84 KK964 pKa = 9.65 ALAADD969 pKa = 3.93 WSSKK973 pKa = 9.54 IGSRR977 pKa = 11.84 AKK979 pKa = 10.42 VVTFEE984 pKa = 4.09 KK985 pKa = 10.7 AVVEE989 pKa = 4.3 EE990 pKa = 4.68 EE991 pKa = 4.26 VFSCIVVDD999 pKa = 4.56 EE1000 pKa = 4.93 LGLYY1004 pKa = 9.18 PPGYY1008 pKa = 10.31 LDD1010 pKa = 6.3 LICLLHH1016 pKa = 6.53 EE1017 pKa = 4.66 PSTLVLLGDD1026 pKa = 4.44 PLQGTYY1032 pKa = 10.22 YY1033 pKa = 11.01 NKK1035 pKa = 10.13 DD1036 pKa = 3.36 DD1037 pKa = 4.76 RR1038 pKa = 11.84 IKK1040 pKa = 10.9 LATVSHH1046 pKa = 6.09 NVFARR1051 pKa = 11.84 LEE1053 pKa = 4.18 GSLPYY1058 pKa = 11.02 LMYY1061 pKa = 10.55 SHH1063 pKa = 7.51 RR1064 pKa = 11.84 LSKK1067 pKa = 10.78 SNRR1070 pKa = 11.84 TFDD1073 pKa = 3.78 IDD1075 pKa = 3.41 THH1077 pKa = 6.78 GNLEE1081 pKa = 4.29 SAGSQRR1087 pKa = 11.84 VKK1089 pKa = 10.91 KK1090 pKa = 10.38 LDD1092 pKa = 3.34 TKK1094 pKa = 10.79 MPTIYY1099 pKa = 10.5 AARR1102 pKa = 11.84 ATKK1105 pKa = 10.27 EE1106 pKa = 4.19 SAEE1109 pKa = 4.08 GTAYY1113 pKa = 9.38 TVSEE1117 pKa = 4.23 TQGLSFKK1124 pKa = 10.55 DD1125 pKa = 3.59 VQVLIDD1131 pKa = 4.54 KK1132 pKa = 10.46 DD1133 pKa = 3.39 WALKK1137 pKa = 10.42 EE1138 pKa = 4.42 DD1139 pKa = 3.82 GDD1141 pKa = 4.44 VIVAFTRR1148 pKa = 11.84 ARR1150 pKa = 11.84 GTTKK1154 pKa = 10.62 YY1155 pKa = 9.01 MCSDD1159 pKa = 3.28 SDD1161 pKa = 3.47 MDD1163 pKa = 3.9 MLKK1166 pKa = 10.61 ARR1168 pKa = 11.84 AKK1170 pKa = 10.68 SEE1172 pKa = 3.91 VLRR1175 pKa = 11.84 SILRR1179 pKa = 11.84 AGKK1182 pKa = 10.04 VGRR1185 pKa = 11.84 DD1186 pKa = 3.49 TILNSLRR1193 pKa = 11.84 KK1194 pKa = 9.3 EE1195 pKa = 4.08 MPNAEE1200 pKa = 4.22 PVFTEE1205 pKa = 3.56 ARR1207 pKa = 11.84 LANTEE1212 pKa = 4.02 EE1213 pKa = 4.43 YY1214 pKa = 10.4 EE1215 pKa = 4.28 EE1216 pKa = 4.92 KK1217 pKa = 11.15 LMGDD1221 pKa = 4.21 PYY1223 pKa = 11.01 LKK1225 pKa = 10.92 GMLRR1229 pKa = 11.84 LLQEE1233 pKa = 4.08 EE1234 pKa = 4.47 EE1235 pKa = 4.13 IEE1237 pKa = 4.14 EE1238 pKa = 4.43 EE1239 pKa = 4.21 EE1240 pKa = 4.86 CEE1242 pKa = 4.14 EE1243 pKa = 4.06 PMAPEE1248 pKa = 3.84 PVKK1251 pKa = 9.81 THH1253 pKa = 6.7 LFLSEE1258 pKa = 4.48 GVNEE1262 pKa = 4.22 MAPFMFVNQSGQRR1275 pKa = 11.84 VKK1277 pKa = 11.01 LGDD1280 pKa = 3.4 RR1281 pKa = 11.84 FNRR1284 pKa = 11.84 EE1285 pKa = 3.65 QKK1287 pKa = 7.26 TTAGLTAQIDD1297 pKa = 3.87 EE1298 pKa = 4.59 MGYY1301 pKa = 10.73 AGQNEE1306 pKa = 4.37 NPCTHH1311 pKa = 6.79 KK1312 pKa = 10.86 ALYY1315 pKa = 9.48 LHH1317 pKa = 6.88 HH1318 pKa = 7.26 KK1319 pKa = 8.8 MDD1321 pKa = 3.63 XAATFMLSVRR1331 pKa = 11.84 KK1332 pKa = 9.47 RR1333 pKa = 11.84 LRR1335 pKa = 11.84 FRR1337 pKa = 11.84 DD1338 pKa = 3.72 PEE1340 pKa = 4.22 KK1341 pKa = 11.01 NRR1343 pKa = 11.84 ARR1345 pKa = 11.84 YY1346 pKa = 7.59 EE1347 pKa = 3.78 KK1348 pKa = 10.22 HH1349 pKa = 6.38 KK1350 pKa = 11.2 GIGRR1354 pKa = 11.84 QMFDD1358 pKa = 3.28 VLKK1361 pKa = 9.58 KK1362 pKa = 7.88 TYY1364 pKa = 9.11 HH1365 pKa = 5.11 WTSIDD1370 pKa = 3.6 SLPPLEE1376 pKa = 4.42 KK1377 pKa = 10.9 AEE1379 pKa = 4.08 ADD1381 pKa = 3.82 FMKK1384 pKa = 10.65 KK1385 pKa = 9.98 RR1386 pKa = 11.84 LNKK1389 pKa = 10.0 SAALLEE1395 pKa = 4.17 RR1396 pKa = 11.84 HH1397 pKa = 6.59 NIRR1400 pKa = 11.84 SDD1402 pKa = 3.63 PDD1404 pKa = 3.2 WPSNIIKK1411 pKa = 10.13 IFLKK1415 pKa = 10.51 QQVCTKK1421 pKa = 10.13 LEE1423 pKa = 3.97 KK1424 pKa = 10.5 RR1425 pKa = 11.84 GVDD1428 pKa = 3.22 AKK1430 pKa = 10.85 AGQTIACFSHH1440 pKa = 6.94 AVLCKK1445 pKa = 9.99 FGPIMRR1451 pKa = 11.84 QTEE1454 pKa = 4.01 RR1455 pKa = 11.84 KK1456 pKa = 9.46 LRR1458 pKa = 11.84 EE1459 pKa = 4.07 LLPPNVMIYY1468 pKa = 8.42 SQKK1471 pKa = 10.73 NYY1473 pKa = 10.61 SDD1475 pKa = 4.12 LDD1477 pKa = 3.67 VWAKK1481 pKa = 10.1 TYY1483 pKa = 11.03 VDD1485 pKa = 3.74 TMVGTDD1491 pKa = 3.07 SDD1493 pKa = 4.4 YY1494 pKa = 11.5 EE1495 pKa = 4.19 AFDD1498 pKa = 3.7 RR1499 pKa = 11.84 SQDD1502 pKa = 3.54 EE1503 pKa = 4.68 KK1504 pKa = 11.14 ILDD1507 pKa = 3.92 LEE1509 pKa = 4.48 VEE1511 pKa = 4.3 VLKK1514 pKa = 10.99 FFLWPEE1520 pKa = 3.82 EE1521 pKa = 4.18 LIRR1524 pKa = 11.84 EE1525 pKa = 4.16 YY1526 pKa = 11.48 VEE1528 pKa = 5.64 LKK1530 pKa = 10.83 LQMSCSMGNLAIMRR1544 pKa = 11.84 FSGEE1548 pKa = 3.46 FGTFFFNTMCNMVFTCMRR1566 pKa = 11.84 YY1567 pKa = 9.51 NVTDD1571 pKa = 3.39 KK1572 pKa = 11.09 TRR1574 pKa = 11.84 LCFAGDD1580 pKa = 3.53 DD1581 pKa = 3.87 MYY1583 pKa = 11.76 APGVLEE1589 pKa = 3.75 VRR1591 pKa = 11.84 TDD1593 pKa = 3.47 YY1594 pKa = 11.48 EE1595 pKa = 4.66 HH1596 pKa = 8.15 ILDD1599 pKa = 4.22 EE1600 pKa = 4.93 LSLKK1604 pKa = 10.94 AKK1606 pKa = 9.69 VQVGDD1611 pKa = 3.79 RR1612 pKa = 11.84 PLFCGWRR1619 pKa = 11.84 MSPYY1623 pKa = 10.54 GIVKK1627 pKa = 9.91 EE1628 pKa = 4.21 PNLVLDD1634 pKa = 3.67 RR1635 pKa = 11.84 WKK1637 pKa = 10.18 IAKK1640 pKa = 10.3 GNGSLHH1646 pKa = 6.78 DD1647 pKa = 3.91 CMVNYY1652 pKa = 10.4 AIEE1655 pKa = 3.94 ASYY1658 pKa = 10.56 GYY1660 pKa = 10.36 RR1661 pKa = 11.84 LSEE1664 pKa = 3.94 YY1665 pKa = 10.32 LYY1667 pKa = 10.38 DD1668 pKa = 3.77 INIDD1672 pKa = 2.83 IDD1674 pKa = 3.74 AQQEE1678 pKa = 3.99 LTRR1681 pKa = 11.84 QIVLVKK1687 pKa = 10.66 DD1688 pKa = 3.39 KK1689 pKa = 11.0 LPPKK1693 pKa = 9.83 VSSIFSDD1700 pKa = 3.73 DD1701 pKa = 4.54 ANEE1704 pKa = 4.1 SWSDD1708 pKa = 3.41 GDD1710 pKa = 5.42 DD1711 pKa = 3.3 EE1712 pKa = 5.25 FLIKK1716 pKa = 10.61 LSEE1719 pKa = 4.05 PQLRR1723 pKa = 11.84 MGLFF1727 pKa = 3.55
Molecular weight: 196.89 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 5.842
IPC2_protein 5.842
IPC_protein 5.906
Toseland 6.237
ProMoST 6.262
Dawson 6.173
Bjellqvist 6.186
Wikipedia 6.173
Rodwell 6.16
Grimsley 6.376
Solomon 6.173
Lehninger 6.16
Nozaki 6.44
DTASelect 6.62
Thurlkill 6.634
EMBOSS 6.605
Sillero 6.547
Patrickios 4.139
IPC_peptide 6.186
IPC2_peptide 6.491
IPC2.peptide.svr19 6.478
Protein with the highest isoelectric point:
>tr|J7HDV3|J7HDV3_9VIRU RNA-binding protein OS=Grapevine virus F OX=1221437 PE=4 SV=1
MM1 pKa = 7.62 AKK3 pKa = 9.74 RR4 pKa = 11.84 RR5 pKa = 11.84 RR6 pKa = 11.84 RR7 pKa = 11.84 RR8 pKa = 11.84 RR9 pKa = 11.84 LGVCKK14 pKa = 10.46 CGALAHH20 pKa = 6.46 NDD22 pKa = 3.27 SMCNKK27 pKa = 9.75 KK28 pKa = 10.21 PISGTKK34 pKa = 9.57 LDD36 pKa = 3.45 RR37 pKa = 11.84 LEE39 pKa = 3.97 FVRR42 pKa = 11.84 LGRR45 pKa = 11.84 VTIEE49 pKa = 4.04 GEE51 pKa = 4.18 TPVAQNTMSKK61 pKa = 10.39 VLGIYY66 pKa = 9.72 SEE68 pKa = 4.59 IVFHH72 pKa = 6.96 LSDD75 pKa = 3.2 SARR78 pKa = 11.84 AVIGRR83 pKa = 11.84 KK84 pKa = 9.05 NKK86 pKa = 10.16 NIRR89 pKa = 11.84 LSRR92 pKa = 11.84 MSGVKK97 pKa = 10.26 GSPEE101 pKa = 4.18 EE102 pKa = 4.03 YY103 pKa = 9.81 PEE105 pKa = 4.53 CYY107 pKa = 10.35 NYY109 pKa = 11.37
Molecular weight: 12.32 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.267
IPC2_protein 9.414
IPC_protein 9.589
Toseland 10.262
ProMoST 9.911
Dawson 10.409
Bjellqvist 10.087
Wikipedia 10.57
Rodwell 10.804
Grimsley 10.467
Solomon 10.452
Lehninger 10.423
Nozaki 10.292
DTASelect 10.058
Thurlkill 10.277
EMBOSS 10.657
Sillero 10.335
Patrickios 10.526
IPC_peptide 10.452
IPC2_peptide 9.077
IPC2.peptide.svr19 8.346
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
5
0
5
2464
109
1727
492.8
55.85
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
6.494 ± 0.956
1.867 ± 0.288
5.641 ± 0.536
7.833 ± 0.426
4.099 ± 0.437
6.412 ± 0.771
2.557 ± 0.36
5.073 ± 0.224
6.737 ± 0.678
9.253 ± 0.766
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
3.206 ± 0.538
4.018 ± 0.191
3.45 ± 0.451
2.557 ± 0.556
6.412 ± 0.855
6.575 ± 0.598
5.276 ± 0.437
7.792 ± 0.752
0.852 ± 0.323
3.856 ± 0.381
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here