Amino acid dipepetide frequency for Fusarium graminearum dsRNA mycovirus-3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.078AlaAla: 10.078 ± 2.2
0.373AlaCys: 0.373 ± 0.267
4.853AlaAsp: 4.853 ± 1.233
4.479AlaGlu: 4.479 ± 0.978
4.479AlaPhe: 4.479 ± 0.978
4.479AlaGly: 4.479 ± 1.636
3.733AlaHis: 3.733 ± 1.512
5.599AlaIle: 5.599 ± 0.869
4.479AlaLys: 4.479 ± 0.455
11.198AlaLeu: 11.198 ± 1.215
1.12AlaMet: 1.12 ± 0.278
4.479AlaAsn: 4.479 ± 0.978
5.599AlaPro: 5.599 ± 1.222
5.972AlaGln: 5.972 ± 0.955
5.599AlaArg: 5.599 ± 0.699
8.585AlaSer: 8.585 ± 0.654
8.959AlaThr: 8.959 ± 2.227
2.986AlaVal: 2.986 ± 0.045
0.373AlaTrp: 0.373 ± 0.267
4.853AlaTyr: 4.853 ± 0.711
0.0AlaXaa: 0.0 ± 0.0
Cys
2.24CysAla: 2.24 ± 1.079
0.0CysCys: 0.0 ± 0.0
0.373CysAsp: 0.373 ± 0.256
0.373CysGlu: 0.373 ± 0.267
0.373CysPhe: 0.373 ± 0.267
1.12CysGly: 1.12 ± 0.801
0.0CysHis: 0.0 ± 0.0
0.747CysIle: 0.747 ± 0.011
0.0CysLys: 0.0 ± 0.0
0.747CysLeu: 0.747 ± 0.511
0.0CysMet: 0.0 ± 0.0
0.747CysAsn: 0.747 ± 0.011
0.373CysPro: 0.373 ± 0.256
0.373CysGln: 0.373 ± 0.267
0.0CysArg: 0.0 ± 0.0
0.373CysSer: 0.373 ± 0.256
0.373CysThr: 0.373 ± 0.267
0.373CysVal: 0.373 ± 0.267
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.106AspAla: 4.106 ± 0.846
0.0AspCys: 0.0 ± 0.0
1.493AspAsp: 1.493 ± 0.545
2.613AspGlu: 2.613 ± 0.745
3.733AspPhe: 3.733 ± 0.057
4.106AspGly: 4.106 ± 1.245
2.24AspHis: 2.24 ± 1.079
0.747AspIle: 0.747 ± 0.011
1.493AspLys: 1.493 ± 0.545
4.853AspLeu: 4.853 ± 0.335
0.0AspMet: 0.0 ± 0.189
2.24AspAsn: 2.24 ± 0.489
3.733AspPro: 3.733 ± 0.057
2.613AspGln: 2.613 ± 0.301
1.866AspArg: 1.866 ± 0.233
3.359AspSer: 3.359 ± 0.733
3.359AspThr: 3.359 ± 0.312
2.613AspVal: 2.613 ± 0.301
0.747AspTrp: 0.747 ± 0.511
2.24AspTyr: 2.24 ± 0.557
0.0AspXaa: 0.0 ± 0.0
Glu
5.599GluAla: 5.599 ± 0.699
0.0GluCys: 0.0 ± 0.0
2.613GluAsp: 2.613 ± 0.824
1.493GluGlu: 1.493 ± 0.023
2.986GluPhe: 2.986 ± 0.045
2.986GluGly: 2.986 ± 0.477
1.493GluHis: 1.493 ± 0.5
1.12GluIle: 1.12 ± 0.767
0.373GluLys: 0.373 ± 0.256
9.332GluLeu: 9.332 ± 0.12
1.493GluMet: 1.493 ± 0.023
1.12GluAsn: 1.12 ± 0.278
1.493GluPro: 1.493 ± 0.023
1.12GluGln: 1.12 ± 0.801
2.613GluArg: 2.613 ± 0.222
1.493GluSer: 1.493 ± 0.545
1.12GluThr: 1.12 ± 0.244
2.613GluVal: 2.613 ± 0.301
0.0GluTrp: 0.0 ± 0.0
1.493GluTyr: 1.493 ± 0.023
0.0GluXaa: 0.0 ± 0.0
Phe
3.359PheAla: 3.359 ± 0.835
0.373PheCys: 0.373 ± 0.267
1.866PheAsp: 1.866 ± 0.812
1.12PheGlu: 1.12 ± 0.801
2.613PhePhe: 2.613 ± 0.222
2.613PheGly: 2.613 ± 0.222
2.24PheHis: 2.24 ± 1.079
2.613PheIle: 2.613 ± 0.301
0.373PheLys: 0.373 ± 0.256
4.853PheLeu: 4.853 ± 1.756
0.0PheMet: 0.0 ± 0.0
2.613PheAsn: 2.613 ± 0.824
2.613PhePro: 2.613 ± 0.745
1.493PheGln: 1.493 ± 0.023
1.493PheArg: 1.493 ± 0.5
7.839PheSer: 7.839 ± 1.188
4.106PheThr: 4.106 ± 0.199
2.24PheVal: 2.24 ± 0.557
0.373PheTrp: 0.373 ± 0.267
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.986GlyAla: 2.986 ± 1.091
0.373GlyCys: 0.373 ± 0.267
2.24GlyAsp: 2.24 ± 0.034
1.866GlyGlu: 1.866 ± 1.335
1.866GlyPhe: 1.866 ± 0.812
3.359GlyGly: 3.359 ± 1.358
2.986GlyHis: 2.986 ± 0.045
3.733GlyIle: 3.733 ± 0.989
2.24GlyLys: 2.24 ± 0.557
8.212GlyLeu: 8.212 ± 0.647
0.747GlyMet: 0.747 ± 0.011
2.986GlyAsn: 2.986 ± 1.0
1.12GlyPro: 1.12 ± 0.278
2.986GlyGln: 2.986 ± 0.568
4.106GlyArg: 4.106 ± 0.199
4.853GlySer: 4.853 ± 0.858
3.359GlyThr: 3.359 ± 0.733
4.106GlyVal: 4.106 ± 0.199
0.0GlyTrp: 0.0 ± 0.0
1.866GlyTyr: 1.866 ± 1.335
0.0GlyXaa: 0.0 ± 0.0
His
2.613HisAla: 2.613 ± 0.301
0.373HisCys: 0.373 ± 0.256
1.12HisAsp: 1.12 ± 0.244
1.493HisGlu: 1.493 ± 0.5
1.866HisPhe: 1.866 ± 0.233
0.747HisGly: 0.747 ± 0.011
0.373HisHis: 0.373 ± 0.256
0.747HisIle: 0.747 ± 0.011
0.0HisLys: 0.0 ± 0.0
4.853HisLeu: 4.853 ± 0.711
0.747HisMet: 0.747 ± 0.511
1.493HisAsn: 1.493 ± 0.023
1.493HisPro: 1.493 ± 0.5
0.747HisGln: 0.747 ± 0.011
1.12HisArg: 1.12 ± 0.278
1.12HisSer: 1.12 ± 0.278
1.866HisThr: 1.866 ± 0.29
2.986HisVal: 2.986 ± 0.045
0.0HisTrp: 0.0 ± 0.0
2.24HisTyr: 2.24 ± 0.489
0.0HisXaa: 0.0 ± 0.0
Ile
3.733IleAla: 3.733 ± 0.579
0.373IleCys: 0.373 ± 0.267
1.866IleAsp: 1.866 ± 0.29
0.747IleGlu: 0.747 ± 0.511
0.747IlePhe: 0.747 ± 0.534
0.373IleGly: 0.373 ± 0.256
0.747IleHis: 0.747 ± 0.011
1.12IleIle: 1.12 ± 0.801
1.493IleLys: 1.493 ± 0.545
3.733IleLeu: 3.733 ± 1.625
0.747IleMet: 0.747 ± 0.511
2.986IleAsn: 2.986 ± 0.045
3.359IlePro: 3.359 ± 0.21
1.12IleGln: 1.12 ± 0.801
2.613IleArg: 2.613 ± 0.824
5.226IleSer: 5.226 ± 1.489
3.359IleThr: 3.359 ± 0.21
3.359IleVal: 3.359 ± 0.312
0.0IleTrp: 0.0 ± 0.0
1.12IleTyr: 1.12 ± 0.278
0.0IleXaa: 0.0 ± 0.0
Lys
3.733LysAla: 3.733 ± 0.579
0.373LysCys: 0.373 ± 0.267
1.866LysAsp: 1.866 ± 0.233
1.12LysGlu: 1.12 ± 0.278
0.373LysPhe: 0.373 ± 0.256
0.373LysGly: 0.373 ± 0.256
0.0LysHis: 0.0 ± 0.0
2.24LysIle: 2.24 ± 0.557
0.747LysLys: 0.747 ± 0.534
4.853LysLeu: 4.853 ± 2.426
0.747LysMet: 0.747 ± 0.011
0.747LysAsn: 0.747 ± 0.011
2.24LysPro: 2.24 ± 0.557
1.12LysGln: 1.12 ± 0.278
1.866LysArg: 1.866 ± 0.812
3.359LysSer: 3.359 ± 0.312
1.866LysThr: 1.866 ± 0.812
1.12LysVal: 1.12 ± 0.244
0.373LysTrp: 0.373 ± 0.267
3.359LysTyr: 3.359 ± 0.733
0.0LysXaa: 0.0 ± 0.0
Leu
11.571LeuAla: 11.571 ± 0.086
1.493LeuCys: 1.493 ± 1.068
5.972LeuAsp: 5.972 ± 2.704
5.226LeuGlu: 5.226 ± 1.125
3.359LeuPhe: 3.359 ± 0.21
5.599LeuGly: 5.599 ± 3.483
1.12LeuHis: 1.12 ± 0.278
3.359LeuIle: 3.359 ± 0.835
4.479LeuLys: 4.479 ± 0.591
12.691LeuLeu: 12.691 ± 2.283
1.493LeuMet: 1.493 ± 0.545
5.599LeuAsn: 5.599 ± 0.346
9.332LeuPro: 9.332 ± 1.688
5.226LeuGln: 5.226 ± 1.648
11.571LeuArg: 11.571 ± 1.131
8.959LeuSer: 8.959 ± 2.478
7.465LeuThr: 7.465 ± 0.113
5.599LeuVal: 5.599 ± 0.346
1.12LeuTrp: 1.12 ± 0.244
1.493LeuTyr: 1.493 ± 1.068
0.0LeuXaa: 0.0 ± 0.0
Met
1.12MetAla: 1.12 ± 0.244
0.0MetCys: 0.0 ± 0.0
1.12MetAsp: 1.12 ± 0.244
0.747MetGlu: 0.747 ± 0.011
0.373MetPhe: 0.373 ± 0.267
0.747MetGly: 0.747 ± 0.511
0.373MetHis: 0.373 ± 0.256
0.747MetIle: 0.747 ± 0.534
0.373MetLys: 0.373 ± 0.267
1.12MetLeu: 1.12 ± 0.278
0.0MetMet: 0.0 ± 0.0
0.373MetAsn: 0.373 ± 0.256
0.373MetPro: 0.373 ± 0.256
0.747MetGln: 0.747 ± 0.534
2.24MetArg: 2.24 ± 0.557
1.866MetSer: 1.866 ± 0.233
0.373MetThr: 0.373 ± 0.267
0.0MetVal: 0.0 ± 0.0
0.373MetTrp: 0.373 ± 0.267
1.493MetTyr: 1.493 ± 0.023
0.0MetXaa: 0.0 ± 0.0
Asn
5.599AsnAla: 5.599 ± 1.222
0.747AsnCys: 0.747 ± 0.011
3.733AsnAsp: 3.733 ± 0.466
0.747AsnGlu: 0.747 ± 0.011
2.24AsnPhe: 2.24 ± 0.034
1.866AsnGly: 1.866 ± 0.756
2.613AsnHis: 2.613 ± 0.301
2.613AsnIle: 2.613 ± 0.824
0.373AsnLys: 0.373 ± 0.267
2.613AsnLeu: 2.613 ± 1.347
1.12AsnMet: 1.12 ± 0.653
2.24AsnAsn: 2.24 ± 1.012
2.24AsnPro: 2.24 ± 0.489
1.866AsnGln: 1.866 ± 0.812
4.106AsnArg: 4.106 ± 1.245
2.986AsnSer: 2.986 ± 0.045
3.359AsnThr: 3.359 ± 0.312
2.986AsnVal: 2.986 ± 0.477
1.12AsnTrp: 1.12 ± 0.767
1.12AsnTyr: 1.12 ± 0.244
0.0AsnXaa: 0.0 ± 0.0
Pro
9.705ProAla: 9.705 ± 1.944
0.373ProCys: 0.373 ± 0.256
3.359ProAsp: 3.359 ± 0.733
4.106ProGlu: 4.106 ± 0.324
2.613ProPhe: 2.613 ± 0.301
5.599ProGly: 5.599 ± 0.869
0.373ProHis: 0.373 ± 0.256
2.24ProIle: 2.24 ± 0.034
1.866ProLys: 1.866 ± 0.29
6.346ProLeu: 6.346 ± 1.211
0.373ProMet: 0.373 ± 0.267
2.613ProAsn: 2.613 ± 1.267
4.479ProPro: 4.479 ± 0.978
3.359ProGln: 3.359 ± 1.256
6.346ProArg: 6.346 ± 1.211
5.972ProSer: 5.972 ± 0.955
2.986ProThr: 2.986 ± 0.045
4.106ProVal: 4.106 ± 1.245
0.0ProTrp: 0.0 ± 0.0
2.613ProTyr: 2.613 ± 1.267
0.0ProXaa: 0.0 ± 0.0
Gln
5.599GlnAla: 5.599 ± 0.699
0.373GlnCys: 0.373 ± 0.256
1.866GlnAsp: 1.866 ± 0.29
1.866GlnGlu: 1.866 ± 0.756
2.24GlnPhe: 2.24 ± 0.034
2.986GlnGly: 2.986 ± 0.477
0.747GlnHis: 0.747 ± 0.011
0.0GlnIle: 0.0 ± 0.0
1.12GlnLys: 1.12 ± 0.278
7.092GlnLeu: 7.092 ± 1.414
0.0GlnMet: 0.0 ± 0.0
2.24GlnAsn: 2.24 ± 0.489
2.613GlnPro: 2.613 ± 0.745
1.866GlnGln: 1.866 ± 0.812
3.359GlnArg: 3.359 ± 0.312
2.613GlnSer: 2.613 ± 0.824
0.0GlnThr: 0.0 ± 0.0
2.986GlnVal: 2.986 ± 0.568
1.866GlnTrp: 1.866 ± 0.29
1.493GlnTyr: 1.493 ± 1.068
0.0GlnXaa: 0.0 ± 0.0
Arg
6.346ArgAla: 6.346 ± 0.358
0.747ArgCys: 0.747 ± 0.011
4.479ArgAsp: 4.479 ± 0.591
2.24ArgGlu: 2.24 ± 0.034
2.24ArgPhe: 2.24 ± 0.557
4.853ArgGly: 4.853 ± 0.858
2.24ArgHis: 2.24 ± 1.012
3.359ArgIle: 3.359 ± 0.312
1.493ArgLys: 1.493 ± 0.545
5.599ArgLeu: 5.599 ± 0.346
0.747ArgMet: 0.747 ± 0.534
4.479ArgAsn: 4.479 ± 0.978
5.599ArgPro: 5.599 ± 1.222
1.12ArgGln: 1.12 ± 0.767
2.986ArgArg: 2.986 ± 0.045
7.092ArgSer: 7.092 ± 0.677
2.24ArgThr: 2.24 ± 1.012
2.986ArgVal: 2.986 ± 0.045
1.866ArgTrp: 1.866 ± 0.756
3.733ArgTyr: 3.733 ± 1.512
0.0ArgXaa: 0.0 ± 0.0
Ser
7.839SerAla: 7.839 ± 2.756
0.373SerCys: 0.373 ± 0.267
3.733SerAsp: 3.733 ± 0.989
2.986SerGlu: 2.986 ± 0.045
5.226SerPhe: 5.226 ± 2.535
5.226SerGly: 5.226 ± 1.125
3.359SerHis: 3.359 ± 0.733
4.106SerIle: 4.106 ± 0.199
5.972SerLys: 5.972 ± 1.136
8.959SerLeu: 8.959 ± 0.136
1.866SerMet: 1.866 ± 0.812
2.24SerAsn: 2.24 ± 1.079
6.346SerPro: 6.346 ± 1.733
3.359SerGln: 3.359 ± 1.779
5.599SerArg: 5.599 ± 0.699
8.585SerSer: 8.585 ± 1.177
3.359SerThr: 3.359 ± 0.733
3.733SerVal: 3.733 ± 0.579
1.493SerTrp: 1.493 ± 0.023
2.613SerTyr: 2.613 ± 0.222
0.0SerXaa: 0.0 ± 0.0
Thr
7.465ThrAla: 7.465 ± 1.455
1.493ThrCys: 1.493 ± 0.023
1.493ThrAsp: 1.493 ± 0.023
3.359ThrGlu: 3.359 ± 0.733
2.613ThrPhe: 2.613 ± 1.869
4.106ThrGly: 4.106 ± 0.324
0.0ThrHis: 0.0 ± 0.0
1.493ThrIle: 1.493 ± 0.545
2.986ThrLys: 2.986 ± 0.568
5.599ThrLeu: 5.599 ± 2.437
0.747ThrMet: 0.747 ± 0.534
1.866ThrAsn: 1.866 ± 0.756
4.479ThrPro: 4.479 ± 2.023
2.613ThrGln: 2.613 ± 0.301
3.733ThrArg: 3.733 ± 1.512
3.733ThrSer: 3.733 ± 0.466
3.359ThrThr: 3.359 ± 0.21
2.24ThrVal: 2.24 ± 0.034
1.493ThrTrp: 1.493 ± 0.023
1.866ThrTyr: 1.866 ± 0.812
0.0ThrXaa: 0.0 ± 0.0
Val
4.106ValAla: 4.106 ± 0.199
0.0ValCys: 0.0 ± 0.0
3.359ValAsp: 3.359 ± 0.733
2.986ValGlu: 2.986 ± 0.477
1.866ValPhe: 1.866 ± 0.812
1.866ValGly: 1.866 ± 0.233
1.493ValHis: 1.493 ± 0.545
0.747ValIle: 0.747 ± 0.011
1.493ValLys: 1.493 ± 0.545
4.853ValLeu: 4.853 ± 0.188
1.493ValMet: 1.493 ± 0.023
1.866ValAsn: 1.866 ± 0.233
7.092ValPro: 7.092 ± 0.154
3.359ValGln: 3.359 ± 0.21
2.986ValArg: 2.986 ± 1.091
3.733ValSer: 3.733 ± 0.579
3.733ValThr: 3.733 ± 0.057
4.106ValVal: 4.106 ± 0.324
0.747ValTrp: 0.747 ± 0.511
1.12ValTyr: 1.12 ± 0.278
0.0ValXaa: 0.0 ± 0.0
Trp
2.24TrpAla: 2.24 ± 0.489
0.373TrpCys: 0.373 ± 0.256
0.373TrpAsp: 0.373 ± 0.267
0.747TrpGlu: 0.747 ± 0.511
0.747TrpPhe: 0.747 ± 0.511
0.373TrpGly: 0.373 ± 0.267
0.373TrpHis: 0.373 ± 0.256
0.373TrpIle: 0.373 ± 0.267
0.0TrpLys: 0.0 ± 0.0
0.747TrpLeu: 0.747 ± 0.011
0.747TrpMet: 0.747 ± 0.511
0.747TrpAsn: 0.747 ± 0.011
0.373TrpPro: 0.373 ± 0.256
0.373TrpGln: 0.373 ± 0.256
0.747TrpArg: 0.747 ± 0.011
1.493TrpSer: 1.493 ± 0.023
0.373TrpThr: 0.373 ± 0.256
0.373TrpVal: 0.373 ± 0.267
0.373TrpTrp: 0.373 ± 0.256
0.747TrpTyr: 0.747 ± 0.534
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.24TyrAla: 2.24 ± 0.557
0.373TyrCys: 0.373 ± 0.267
0.747TyrAsp: 0.747 ± 0.011
2.24TyrGlu: 2.24 ± 0.557
2.24TyrPhe: 2.24 ± 0.034
2.613TyrGly: 2.613 ± 0.222
1.493TyrHis: 1.493 ± 1.023
1.12TyrIle: 1.12 ± 0.244
1.12TyrLys: 1.12 ± 0.278
4.479TyrLeu: 4.479 ± 0.591
0.0TyrMet: 0.0 ± 0.0
2.613TyrAsn: 2.613 ± 1.347
4.479TyrPro: 4.479 ± 1.113
1.493TyrGln: 1.493 ± 0.545
1.493TyrArg: 1.493 ± 0.023
3.733TyrSer: 3.733 ± 1.512
1.12TyrThr: 1.12 ± 0.767
1.493TyrVal: 1.493 ± 0.5
0.373TyrTrp: 0.373 ± 0.256
1.12TyrTyr: 1.12 ± 0.278
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2680 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski