Palleronia abyssalis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Palleronia

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4308 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2R8BZ87|A0A2R8BZ87_9RHOB 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Palleronia abyssalis OX=1501240 GN=fabG_7 PE=4 SV=1
MM1 pKa = 7.65RR2 pKa = 11.84RR3 pKa = 11.84NTILFLAVMTGTSPAVAQEE22 pKa = 4.11NVFGEE27 pKa = 4.31IGASYY32 pKa = 10.35GYY34 pKa = 11.25GDD36 pKa = 5.28IEE38 pKa = 5.02DD39 pKa = 3.49VDD41 pKa = 4.93ANVDD45 pKa = 3.38TFQAYY50 pKa = 9.23GAGAFVSAAGLGIQLGGAYY69 pKa = 8.31DD70 pKa = 3.92TVSVDD75 pKa = 3.29NLGDD79 pKa = 3.62IEE81 pKa = 5.43SYY83 pKa = 10.55TIDD86 pKa = 2.89GHH88 pKa = 8.05IYY90 pKa = 10.88GDD92 pKa = 3.76FGSAKK97 pKa = 9.89AGVFAGLTRR106 pKa = 11.84VGEE109 pKa = 4.04LEE111 pKa = 3.88IFGVGGFDD119 pKa = 3.27IDD121 pKa = 4.56EE122 pKa = 4.84DD123 pKa = 4.04VLSYY127 pKa = 10.88GVEE130 pKa = 3.99GQSRR134 pKa = 11.84VGSFTYY140 pKa = 9.88HH141 pKa = 6.65GYY143 pKa = 11.16AGVADD148 pKa = 3.85VQGPEE153 pKa = 3.97FLEE156 pKa = 4.22TTLYY160 pKa = 11.11GIGADD165 pKa = 3.79FDD167 pKa = 4.29VSPALQLTANFDD179 pKa = 3.94GAEE182 pKa = 3.96LSADD186 pKa = 3.96GIEE189 pKa = 4.29EE190 pKa = 4.16EE191 pKa = 5.08LNLSTVSLGVDD202 pKa = 3.29YY203 pKa = 11.12YY204 pKa = 11.92VNSQKK209 pKa = 11.09APVRR213 pKa = 11.84LSATVGRR220 pKa = 11.84DD221 pKa = 3.0MAEE224 pKa = 3.59FDD226 pKa = 4.67GFDD229 pKa = 4.26ADD231 pKa = 4.01GLSIGVGAAVLFGNQPNSNRR251 pKa = 11.84EE252 pKa = 3.81KK253 pKa = 11.01LFDD256 pKa = 3.67STGLPFF262 pKa = 5.1

Molecular weight: 27.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2R8BXY6|A0A2R8BXY6_9RHOB Pyrophosphatase PpaX OS=Palleronia abyssalis OX=1501240 GN=ppaX PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.3KK41 pKa = 10.65LSAA44 pKa = 3.91

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4308

0

4308

1309259

31

1760

303.9

32.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.306 ± 0.05

0.873 ± 0.012

6.427 ± 0.037

5.936 ± 0.04

3.618 ± 0.023

8.808 ± 0.037

2.014 ± 0.019

5.118 ± 0.029

2.696 ± 0.031

9.965 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.711 ± 0.016

2.343 ± 0.019

5.251 ± 0.029

3.055 ± 0.021

7.276 ± 0.037

5.142 ± 0.027

5.587 ± 0.022

7.339 ± 0.028

1.416 ± 0.018

2.118 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski