Diodia vein chlorosis virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7BKK0|E7BKK0_9CLOS p60 OS=Diodia vein chlorosis virus OX=656520 PE=4 SV=1
MM1 pKa = 7.41ALVVLLLLEE10 pKa = 4.16MFGGFNSYY18 pKa = 10.55YY19 pKa = 10.76LSDD22 pKa = 3.5NSSFSGQILVIRR34 pKa = 11.84TEE36 pKa = 4.08DD37 pKa = 3.52PKK39 pKa = 11.5LLTDD43 pKa = 4.32ILLEE47 pKa = 3.86LPYY50 pKa = 10.37IKK52 pKa = 10.35EE53 pKa = 3.8RR54 pKa = 11.84WW55 pKa = 3.38

Molecular weight: 6.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7BKJ9|E7BKJ9_9CLOS p6 OS=Diodia vein chlorosis virus OX=656520 PE=4 SV=1
MM1 pKa = 6.94NTDD4 pKa = 3.27ILISCLEE11 pKa = 3.94KK12 pKa = 11.04FNINKK17 pKa = 9.12NFSFEE22 pKa = 4.39NYY24 pKa = 9.17GSQGRR29 pKa = 11.84FRR31 pKa = 11.84FWYY34 pKa = 9.76NIQYY38 pKa = 9.87YY39 pKa = 10.75LKK41 pKa = 10.63LCC43 pKa = 4.27

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

6925

43

2505

692.5

79.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.812 ± 0.272

2.094 ± 0.242

6.801 ± 0.196

5.805 ± 0.313

5.762 ± 0.248

4.765 ± 0.237

1.314 ± 0.135

7.032 ± 0.249

8.953 ± 0.296

8.982 ± 0.198

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.599 ± 0.213

6.469 ± 0.504

3.018 ± 0.201

2.671 ± 0.142

4.635 ± 0.138

7.841 ± 0.344

4.996 ± 0.297

7.206 ± 0.242

0.664 ± 0.066

4.578 ± 0.182
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski