Haladaptatus litoreus

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus

Average proteome isoelectric point is 5.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4885 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N7BLR0|A0A1N7BLR0_9EURY Rad3-related DNA helicase OS=Haladaptatus litoreus OX=553468 GN=SAMN05421858_2626 PE=4 SV=1
MM1 pKa = 7.64AIDD4 pKa = 3.84PQFHH8 pKa = 6.32EE9 pKa = 4.45NRR11 pKa = 11.84EE12 pKa = 4.15KK13 pKa = 11.13VDD15 pKa = 3.35DD16 pKa = 4.37HH17 pKa = 7.5DD18 pKa = 4.59GHH20 pKa = 6.87DD21 pKa = 3.28VWGPVDD27 pKa = 4.4EE28 pKa = 4.58PDD30 pKa = 3.33KK31 pKa = 11.46LGIHH35 pKa = 5.72GTHH38 pKa = 5.93VAVDD42 pKa = 4.39FDD44 pKa = 4.39LCIADD49 pKa = 4.45GACLEE54 pKa = 4.62DD55 pKa = 4.31CPVDD59 pKa = 3.53VFEE62 pKa = 4.76WVDD65 pKa = 3.69TPGHH69 pKa = 6.56PEE71 pKa = 3.96SEE73 pKa = 4.45EE74 pKa = 3.97KK75 pKa = 10.71ADD77 pKa = 3.91PANEE81 pKa = 4.02AQCIDD86 pKa = 3.76CMLCVDD92 pKa = 4.72VCPVDD97 pKa = 5.72AIDD100 pKa = 3.53VDD102 pKa = 3.76AGRR105 pKa = 11.84VV106 pKa = 3.27

Molecular weight: 11.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N6X5Y0|A0A1N6X5Y0_9EURY PGF-CTERM protein/surface glycoprotein OS=Haladaptatus litoreus OX=553468 GN=SAMN05421858_0997 PE=3 SV=1
MM1 pKa = 7.52LSILTPIRR9 pKa = 11.84SVLRR13 pKa = 11.84SIINVIIAIITLPLRR28 pKa = 11.84ILRR31 pKa = 11.84RR32 pKa = 11.84LLL34 pKa = 3.68

Molecular weight: 3.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4885

0

4885

1295187

29

1700

265.1

29.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.229 ± 0.043

0.793 ± 0.012

7.47 ± 0.049

8.41 ± 0.053

3.699 ± 0.027

8.106 ± 0.036

2.123 ± 0.021

4.863 ± 0.029

2.626 ± 0.023

8.849 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.986 ± 0.017

3.124 ± 0.025

4.436 ± 0.023

2.948 ± 0.025

6.021 ± 0.038

6.249 ± 0.034

6.594 ± 0.03

8.405 ± 0.036

1.223 ± 0.015

2.847 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski