Streptococcus phage Javan173

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 57 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6A291|A0A4D6A291_9CAUD HTH cro/C1-type domain-containing protein OS=Streptococcus phage Javan173 OX=2548022 GN=Javan173_0051 PE=4 SV=1
MM1 pKa = 7.57EE2 pKa = 6.41LLLQSLQRR10 pKa = 11.84WNATGDD16 pKa = 3.49EE17 pKa = 4.15EE18 pKa = 5.92HH19 pKa = 6.68YY20 pKa = 10.95QDD22 pKa = 4.15LQRR25 pKa = 11.84ILDD28 pKa = 3.86YY29 pKa = 11.44QEE31 pKa = 5.41GEE33 pKa = 4.3EE34 pKa = 4.24NGCC37 pKa = 4.18

Molecular weight: 4.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6A672|A0A4D6A672_9CAUD Portal protein OS=Streptococcus phage Javan173 OX=2548022 GN=Javan173_0023 PE=4 SV=1
MM1 pKa = 6.78VRR3 pKa = 11.84QMAYY7 pKa = 9.84KK8 pKa = 10.3SKK10 pKa = 9.14QAQVATEE17 pKa = 4.24KK18 pKa = 10.56EE19 pKa = 4.31LEE21 pKa = 4.09RR22 pKa = 11.84SSLRR26 pKa = 11.84IEE28 pKa = 4.43RR29 pKa = 11.84SAKK32 pKa = 9.91VNAPVKK38 pKa = 10.55KK39 pKa = 10.13GVLRR43 pKa = 11.84NTIFSIKK50 pKa = 10.07AGKK53 pKa = 8.03LTYY56 pKa = 10.35KK57 pKa = 9.19VTAPQHH63 pKa = 4.35YY64 pKa = 9.9AIYY67 pKa = 10.09VEE69 pKa = 4.0KK70 pKa = 9.85GTRR73 pKa = 11.84KK74 pKa = 8.61MRR76 pKa = 11.84AKK78 pKa = 10.47PFMAPAIDD86 pKa = 3.63AEE88 pKa = 4.3RR89 pKa = 11.84PKK91 pKa = 10.84LINNLRR97 pKa = 11.84KK98 pKa = 9.65IYY100 pKa = 10.53GKK102 pKa = 10.52

Molecular weight: 11.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

57

0

57

13120

37

1550

230.2

25.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.399 ± 0.766

0.473 ± 0.092

6.128 ± 0.457

7.088 ± 0.563

3.986 ± 0.221

6.7 ± 0.453

1.479 ± 0.178

6.242 ± 0.282

7.325 ± 0.403

8.346 ± 0.313

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.462 ± 0.177

5.152 ± 0.252

2.858 ± 0.247

4.802 ± 0.238

4.337 ± 0.371

6.38 ± 0.56

6.646 ± 0.354

6.829 ± 0.229

1.09 ± 0.146

3.277 ± 0.337
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski