Marinitoga camini virus 2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A139ZPN4|A0A139ZPN4_9CAUD Uncharacterized protein OS=Marinitoga camini virus 2 OX=1629953 GN=UF09_30 PE=4 SV=1
MM1 pKa = 7.46TNLEE5 pKa = 4.43RR6 pKa = 11.84IRR8 pKa = 11.84IEE10 pKa = 4.85LRR12 pKa = 11.84DD13 pKa = 3.67LNGKK17 pKa = 8.77VFADD21 pKa = 3.9SEE23 pKa = 4.5LEE25 pKa = 3.84AWLGDD30 pKa = 3.38HH31 pKa = 7.03GLNKK35 pKa = 10.21DD36 pKa = 3.88DD37 pKa = 6.57LYY39 pKa = 11.44LAEE42 pKa = 4.35NKK44 pKa = 10.09SYY46 pKa = 11.25LMLAVRR52 pKa = 11.84DD53 pKa = 3.95ALRR56 pKa = 11.84QLLRR60 pKa = 11.84DD61 pKa = 3.24WDD63 pKa = 4.06SAKK66 pKa = 8.47TTIKK70 pKa = 10.71GDD72 pKa = 3.66YY73 pKa = 9.51QEE75 pKa = 5.8GYY77 pKa = 9.7SKK79 pKa = 10.9SALASEE85 pKa = 4.75IEE87 pKa = 4.54RR88 pKa = 11.84ITRR91 pKa = 11.84EE92 pKa = 4.14YY93 pKa = 10.75EE94 pKa = 3.06WDD96 pKa = 4.24LIIGEE101 pKa = 4.56MGYY104 pKa = 11.08EE105 pKa = 4.08DD106 pKa = 3.79

Molecular weight: 12.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A139ZPK8|A0A139ZPK8_9CAUD HTH cro/C1-type domain-containing protein OS=Marinitoga camini virus 2 OX=1629953 GN=UF09_4 PE=4 SV=1
MM1 pKa = 7.55KK2 pKa = 10.44GGDD5 pKa = 3.54IMAKK9 pKa = 7.17TNKK12 pKa = 9.12GKK14 pKa = 10.7KK15 pKa = 8.38IVPVKK20 pKa = 10.69SYY22 pKa = 8.34TRR24 pKa = 11.84KK25 pKa = 10.19KK26 pKa = 9.22NGKK29 pKa = 7.72IEE31 pKa = 3.98KK32 pKa = 9.69VRR34 pKa = 11.84GHH36 pKa = 6.44RR37 pKa = 11.84RR38 pKa = 11.84STPNN42 pKa = 2.98

Molecular weight: 4.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

14850

42

1548

212.1

24.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.165 ± 0.674

0.343 ± 0.081

5.744 ± 0.206

8.209 ± 0.596

4.714 ± 0.304

5.253 ± 0.333

1.239 ± 0.139

10.054 ± 0.327

11.347 ± 0.741

8.781 ± 0.335

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.034 ± 0.171

6.956 ± 0.304

2.579 ± 0.147

2.929 ± 0.185

3.158 ± 0.301

5.852 ± 0.323

5.32 ± 0.545

4.997 ± 0.222

1.051 ± 0.094

4.276 ± 0.294
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski