Linderina pennispora

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Zoopagomycota; Kickxellomycotina; Kickxellomycetes; Kickxellales; Kickxellaceae; Linderina

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9274 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y1VXJ1|A0A1Y1VXJ1_9FUNG Uncharacterized protein OS=Linderina pennispora OX=61395 GN=DL89DRAFT_270689 PE=4 SV=1
MM1 pKa = 7.18SHH3 pKa = 7.04YY4 pKa = 9.7DD5 pKa = 3.49TAEE8 pKa = 3.92PAADD12 pKa = 4.08DD13 pKa = 4.96DD14 pKa = 4.72FGLVDD19 pKa = 5.72FDD21 pKa = 5.17FADD24 pKa = 3.64SDD26 pKa = 4.17TPAAAHH32 pKa = 6.55AEE34 pKa = 4.41HH35 pKa = 6.78NEE37 pKa = 4.08SPALPGDD44 pKa = 3.64EE45 pKa = 4.1FDD47 pKa = 4.16YY48 pKa = 11.65ANMDD52 pKa = 3.88DD53 pKa = 5.56ADD55 pKa = 4.41FEE57 pKa = 4.64MLVDD61 pKa = 3.98NPPTEE66 pKa = 4.16TATAIHH72 pKa = 7.08SDD74 pKa = 3.69TEE76 pKa = 4.26GAGQHH81 pKa = 5.29TEE83 pKa = 3.86EE84 pKa = 4.69LVDD87 pKa = 4.11FTEE90 pKa = 4.6EE91 pKa = 4.17SLIEE95 pKa = 4.32PDD97 pKa = 5.66SIAEE101 pKa = 4.12DD102 pKa = 3.82AGSSSLPDD110 pKa = 3.63DD111 pKa = 4.57EE112 pKa = 5.36KK113 pKa = 11.58LHH115 pKa = 7.63DD116 pKa = 4.39SLTVNPAEE124 pKa = 4.18SAEE127 pKa = 4.15VSVLAPAPSGHH138 pKa = 7.01ADD140 pKa = 3.48EE141 pKa = 5.31DD142 pKa = 4.65TNGADD147 pKa = 4.54LPAGTPAEE155 pKa = 4.89LIRR158 pKa = 11.84SPALRR163 pKa = 11.84TAGTDD168 pKa = 3.37DD169 pKa = 4.45SLAATDD175 pKa = 4.66NYY177 pKa = 11.18DD178 pKa = 4.35SLVTDD183 pKa = 4.37PFEE186 pKa = 4.76SATSPALPPADD197 pKa = 3.41FVHH200 pKa = 7.07DD201 pKa = 3.89VEE203 pKa = 4.75GTHH206 pKa = 7.03AVDD209 pKa = 3.52HH210 pKa = 6.35SVYY213 pKa = 10.99DD214 pKa = 3.61HH215 pKa = 5.53QTEE218 pKa = 4.07DD219 pKa = 3.62DD220 pKa = 3.81ALVNYY225 pKa = 9.1EE226 pKa = 4.36DD227 pKa = 4.42SDD229 pKa = 4.22VEE231 pKa = 4.4AEE233 pKa = 3.89IEE235 pKa = 4.39EE236 pKa = 4.39IRR238 pKa = 11.84TTDD241 pKa = 3.09PTRR244 pKa = 11.84RR245 pKa = 11.84VPDD248 pKa = 3.46AQVPVTWVFCEE259 pKa = 4.14GDD261 pKa = 3.07WMVYY265 pKa = 10.34LGPEE269 pKa = 3.83QTSYY273 pKa = 11.12DD274 pKa = 3.35AEE276 pKa = 4.23YY277 pKa = 10.67QHH279 pKa = 7.05VLFHH283 pKa = 6.06MSIAQLINNLHH294 pKa = 6.55TDD296 pKa = 3.57TLLKK300 pKa = 10.98DD301 pKa = 3.71EE302 pKa = 4.75VEE304 pKa = 4.3IALEE308 pKa = 4.43FPSLGLKK315 pKa = 9.43IDD317 pKa = 3.6MRR319 pKa = 11.84DD320 pKa = 3.28QEE322 pKa = 4.52SFEE325 pKa = 3.86ITLAQLYY332 pKa = 9.94KK333 pKa = 10.58EE334 pKa = 4.29SQLPSGLASSPYY346 pKa = 8.4FTSASASNYY355 pKa = 9.23CPSPEE360 pKa = 3.81SFAFVIHH367 pKa = 6.13TRR369 pKa = 11.84NSVQSTLEE377 pKa = 4.39HH378 pKa = 6.33IMHH381 pKa = 7.15TLSQHH386 pKa = 5.07EE387 pKa = 4.15ASIEE391 pKa = 3.91AVIPPSEE398 pKa = 4.52DD399 pKa = 3.11PVTVEE404 pKa = 4.34GSVEE408 pKa = 3.97PEE410 pKa = 4.08SVDD413 pKa = 3.57EE414 pKa = 4.82AEE416 pKa = 4.25PAALSEE422 pKa = 4.39EE423 pKa = 4.38AVEE426 pKa = 4.14HH427 pKa = 5.86VPRR430 pKa = 11.84EE431 pKa = 4.08SDD433 pKa = 4.7LEE435 pKa = 4.09DD436 pKa = 3.65HH437 pKa = 6.86SADD440 pKa = 3.59EE441 pKa = 4.38SLEE444 pKa = 4.07AAAA447 pKa = 5.77

Molecular weight: 48.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y1WN60|A0A1Y1WN60_9FUNG Uncharacterized protein OS=Linderina pennispora OX=61395 GN=DL89DRAFT_264784 PE=4 SV=1
MM1 pKa = 7.58LLLPKK6 pKa = 9.34TARR9 pKa = 11.84PSLLLLFTLLLLFTLPPLLMLPLLPTLLQCQFLLRR44 pKa = 11.84PTRR47 pKa = 11.84PRR49 pKa = 11.84VPARR53 pKa = 11.84TFAMVPGSTTPAAAIPVLAAIMSAAAMSRR82 pKa = 11.84AAATTSAAAMNRR94 pKa = 11.84AAATTSAAATSHH106 pKa = 6.45AAAIMSAAAMSRR118 pKa = 11.84AATTIAAAMNRR129 pKa = 11.84AAATTSAAAMSRR141 pKa = 11.84AATTTAAATTTAAAMILAAITIAAATTTAAATMTAAVRR179 pKa = 11.84LATTSSALLSTRR191 pKa = 11.84TAASSTSGATRR202 pKa = 11.84AATATFVPKK211 pKa = 10.6LPQLLIRR218 pKa = 11.84LIPINN223 pKa = 3.74

Molecular weight: 22.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9274

0

9274

3585573

49

5398

386.6

42.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.522 ± 0.035

1.512 ± 0.012

5.576 ± 0.021

5.543 ± 0.027

3.666 ± 0.017

6.552 ± 0.023

2.529 ± 0.012

4.883 ± 0.021

4.409 ± 0.024

9.056 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.603 ± 0.012

3.455 ± 0.018

5.437 ± 0.025

4.243 ± 0.022

6.221 ± 0.024

8.023 ± 0.031

5.797 ± 0.023

6.784 ± 0.022

1.284 ± 0.01

2.906 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski