Candidatus Termititenax persephonae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Candidatus Margulisbacteria; Candidatus Termititenacia; Candidatus Termititenacales; Candidatus Termititenacaceae; Candidatus Termititenax

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1739 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A388TEF2|A0A388TEF2_9BACT Pyruvate:ferredoxin oxidoreductase subunit gamma OS=Candidatus Termititenax persephonae OX=2218525 GN=porC PE=4 SV=1
MM1 pKa = 7.87PKK3 pKa = 10.08PAVLLLEE10 pKa = 5.52DD11 pKa = 3.64GTLFNGFAFGYY22 pKa = 9.98AGEE25 pKa = 4.37ATGEE29 pKa = 4.44SCFNTSLSGYY39 pKa = 7.81QEE41 pKa = 5.06IITDD45 pKa = 4.05PSYY48 pKa = 11.28AGQIVAMTAPMIGNYY63 pKa = 8.95GANNADD69 pKa = 3.87TEE71 pKa = 4.52SAAPALRR78 pKa = 11.84GG79 pKa = 3.44

Molecular weight: 8.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A388TJB3|A0A388TJB3_9BACT Methyltransf_11 domain-containing protein OS=Candidatus Termititenax persephonae OX=2218525 GN=NO2_1412 PE=4 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.13RR4 pKa = 11.84TFQPKK9 pKa = 9.95ALRR12 pKa = 11.84EE13 pKa = 3.95KK14 pKa = 10.17RR15 pKa = 11.84KK16 pKa = 10.4KK17 pKa = 10.86GFLSRR22 pKa = 11.84MATVGGRR29 pKa = 11.84NVVRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.0GRR40 pKa = 11.84KK41 pKa = 8.55RR42 pKa = 11.84LSVV45 pKa = 3.2

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1739

0

1739

552951

19

5827

318.0

35.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.365 ± 0.091

0.935 ± 0.027

5.41 ± 0.051

6.056 ± 0.061

3.893 ± 0.043

7.037 ± 0.067

1.62 ± 0.029

6.351 ± 0.051

6.214 ± 0.075

10.462 ± 0.093

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.757 ± 0.026

4.86 ± 0.072

4.056 ± 0.035

4.089 ± 0.041

5.277 ± 0.063

5.616 ± 0.061

5.597 ± 0.068

6.359 ± 0.056

1.062 ± 0.024

3.984 ± 0.05
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski