Granulicatella adiacens ATCC 49175

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella adiacens

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1920 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8NG85|C8NG85_9LACT Transglycosylase associated protein OS=Granulicatella adiacens ATCC 49175 OX=638301 GN=HMPREF0444_0930 PE=3 SV=1
MM1 pKa = 7.32NEE3 pKa = 3.96KK4 pKa = 10.29EE5 pKa = 4.19SGIMATALIVYY16 pKa = 10.13ASLTGNTEE24 pKa = 3.95EE25 pKa = 4.84IADD28 pKa = 3.82ILAEE32 pKa = 4.08ALEE35 pKa = 4.2EE36 pKa = 4.13RR37 pKa = 11.84GVEE40 pKa = 3.99VDD42 pKa = 3.9VKK44 pKa = 10.84EE45 pKa = 4.41CTSAQASEE53 pKa = 3.78FHH55 pKa = 6.93NYY57 pKa = 9.73DD58 pKa = 3.18INVVATYY65 pKa = 9.28TYY67 pKa = 9.77GTDD70 pKa = 3.34GDD72 pKa = 4.46LPDD75 pKa = 5.25EE76 pKa = 4.33IVDD79 pKa = 4.41FYY81 pKa = 11.84EE82 pKa = 4.07EE83 pKa = 4.86LEE85 pKa = 4.25EE86 pKa = 4.37EE87 pKa = 4.34DD88 pKa = 3.74LTGKK92 pKa = 10.64VYY94 pKa = 10.63GALGSGDD101 pKa = 3.3TFYY104 pKa = 11.52DD105 pKa = 3.66KK106 pKa = 10.96FCQSVLDD113 pKa = 4.46FDD115 pKa = 4.34AQFAKK120 pKa = 10.19TGAKK124 pKa = 9.79KK125 pKa = 10.19GAEE128 pKa = 3.92NVLVDD133 pKa = 4.99LNAEE137 pKa = 4.16AEE139 pKa = 4.53DD140 pKa = 4.03IEE142 pKa = 5.11HH143 pKa = 6.31IQAFAQSLVEE153 pKa = 4.43ALAA156 pKa = 4.25

Molecular weight: 16.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8NI40|C8NI40_9LACT 50S ribosomal protein L33 OS=Granulicatella adiacens ATCC 49175 OX=638301 GN=rpmG PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.29QPSKK9 pKa = 10.06RR10 pKa = 11.84KK11 pKa = 8.12RR12 pKa = 11.84QKK14 pKa = 8.89VHH16 pKa = 5.8GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 9.46NGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.8GRR39 pKa = 11.84KK40 pKa = 8.76VLAAA44 pKa = 4.31

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1920

0

1920

573676

37

1905

298.8

33.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.002 ± 0.052

0.641 ± 0.016

5.072 ± 0.044

7.816 ± 0.066

4.633 ± 0.041

6.645 ± 0.056

1.882 ± 0.028

7.402 ± 0.061

7.08 ± 0.052

9.525 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.665 ± 0.026

4.564 ± 0.041

3.366 ± 0.036

3.882 ± 0.048

3.953 ± 0.042

5.928 ± 0.047

5.933 ± 0.055

7.42 ± 0.045

0.939 ± 0.021

3.653 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski